# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg21942.fasta.nr -Q ../query/mKIAA1112.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1112, 280 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918989 sequences Expectation_n fit: rho(ln(x))= 4.9895+/-0.000183; mu= 10.5909+/- 0.010 mean_var=74.9134+/-14.549, 0's: 36 Z-trim: 53 B-trim: 0 in 0/65 Lambda= 0.148182 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|52782734|sp|Q7TNR9.2|ARHG4_MOUSE RecName: Full= ( 484) 1881 411.1 1.8e-112 gi|149046409|gb|EDL99302.1| similar to Rho guanine ( 484) 1881 411.1 1.8e-112 gi|74199612|dbj|BAE41480.1| unnamed protein produc ( 484) 1881 411.1 1.8e-112 gi|149046410|gb|EDL99303.1| similar to Rho guanine ( 608) 1881 411.2 2.2e-112 gi|148682512|gb|EDL14459.1| Rho guanine nucleotide ( 649) 1881 411.3 2.3e-112 gi|109485930|ref|XP_237049.4| PREDICTED: similar t (1212) 1881 411.5 3.6e-112 gi|74145036|dbj|BAE22216.1| unnamed protein produc ( 484) 1873 409.4 6e-112 gi|114580875|ref|XP_525919.2| PREDICTED: Rho guani ( 619) 1781 389.9 6e-106 gi|6807748|emb|CAB70681.1| hypothetical protein [H ( 496) 1760 385.3 1.1e-104 gi|62702208|gb|AAX93134.1| unknown [Homo sapiens] ( 547) 1760 385.3 1.2e-104 gi|9857318|dbj|BAB11941.1| APC-stimulated guanine ( 619) 1760 385.4 1.3e-104 gi|52782759|sp|Q9NR80.2|ARHG4_HUMAN RecName: Full= ( 657) 1760 385.4 1.4e-104 gi|119571655|gb|EAW51270.1| Rho guanine nucleotide ( 690) 1760 385.4 1.5e-104 gi|89954543|gb|ABD83670.1| rho guanine nucleotide ( 630) 1749 383.0 7e-104 gi|73984123|ref|XP_540976.2| PREDICTED: similar to ( 566) 1745 382.1 1.2e-103 gi|194222096|ref|XP_001504974.2| PREDICTED: Rho gu ( 689) 1736 380.3 5.1e-103 gi|194664435|ref|XP_582211.4| PREDICTED: similar t (2090) 1737 380.9 1e-102 gi|8809845|gb|AAF79955.1|AF249745_1 RhoGEF [Homo s ( 720) 1629 357.4 4.1e-96 gi|126326063|ref|XP_001376703.1| PREDICTED: simila (2140) 1607 353.1 2.4e-94 gi|118094842|ref|XP_422582.2| PREDICTED: similar t ( 594) 1554 341.3 2.4e-91 gi|224059430|ref|XP_002189276.1| PREDICTED: simila ( 663) 1544 339.2 1.1e-90 gi|125805553|ref|XP_687404.2| PREDICTED: similar t ( 621) 1498 329.4 9.8e-88 gi|119571656|gb|EAW51271.1| Rho guanine nucleotide ( 670) 1476 324.7 2.7e-86 gi|223648074|gb|ACN10795.1| Rho guanine nucleotide ( 649) 1451 319.3 1.1e-84 gi|159795123|pdb|2PZ1|A Chain A, Crystal Structure ( 466) 1399 308.1 1.9e-81 gi|169159034|emb|CAQ15264.1| novel protein similar ( 665) 1259 278.3 2.5e-72 gi|122920033|pdb|2DX1|A Chain A, Crystal Structure ( 482) 1241 274.3 2.8e-71 gi|224043217|ref|XP_002191719.1| PREDICTED: sperma (1381) 1192 264.2 8.7e-68 gi|73993415|ref|XP_543166.2| PREDICTED: similar to ( 507) 1186 262.6 1e-67 gi|74196563|dbj|BAE34401.1| unnamed protein produc ( 304) 1180 261.1 1.7e-67 gi|149730095|ref|XP_001491326.1| PREDICTED: simila (1407) 1186 263.0 2.2e-67 gi|60360290|dbj|BAD90389.1| mFLJ00298 protein [Mus ( 577) 1180 261.4 2.7e-67 gi|109501637|ref|XP_224253.4| PREDICTED: similar t ( 764) 1181 261.7 2.9e-67 gi|219521304|gb|AAI45286.1| Unknown (protein for M ( 656) 1180 261.4 3e-67 gi|126253807|sp|Q5DU57.2|SPT13_MOUSE RecName: Full ( 656) 1180 261.4 3e-67 gi|118085033|ref|XP_417134.2| PREDICTED: hypotheti (1271) 1181 261.9 4.2e-67 gi|223459924|gb|AAI38456.1| Spata13 protein [Mus m (1149) 1180 261.6 4.5e-67 gi|94397197|ref|XP_906995.2| PREDICTED: spermatoge (1447) 1180 261.7 5.3e-67 gi|194672043|ref|XP_001788517.1| PREDICTED: simila (1208) 1173 260.1 1.3e-66 gi|21756901|dbj|BAC04977.1| unnamed protein produc ( 304) 1166 258.1 1.3e-66 gi|194386936|dbj|BAG59834.1| unnamed protein produ ( 512) 1166 258.3 2e-66 gi|47077667|dbj|BAD18714.1| FLJ00298 protein [Homo ( 527) 1166 258.3 2e-66 gi|123228797|emb|CAH72290.2| spermatogenesis assoc ( 574) 1166 258.4 2.1e-66 gi|194384934|dbj|BAG60873.1| unnamed protein produ ( 596) 1166 258.4 2.2e-66 gi|74752049|sp|Q96N96.1|SPT13_HUMAN RecName: Full= ( 652) 1166 258.4 2.4e-66 gi|194375255|dbj|BAG62740.1| unnamed protein produ ( 536) 1162 257.5 3.7e-66 gi|168278475|dbj|BAG11117.1| spermatogenesis-assoc (1277) 1166 258.7 3.9e-66 gi|114648993|ref|XP_001152608.1| PREDICTED: hypoth ( 566) 1160 257.1 5.2e-66 gi|114648991|ref|XP_001152800.1| PREDICTED: hypoth ( 574) 1160 257.1 5.2e-66 gi|114648989|ref|XP_001152667.1| PREDICTED: hypoth ( 598) 1160 257.1 5.4e-66 >>gi|52782734|sp|Q7TNR9.2|ARHG4_MOUSE RecName: Full=Rho (484 aa) initn: 1881 init1: 1881 opt: 1881 Z-score: 2175.4 bits: 411.1 E(): 1.8e-112 Smith-Waterman score: 1881; 100.000% identity (100.000% similar) in 280 aa overlap (1-280:205-484) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|527 NHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKY 180 190 200 210 220 230 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 240 250 260 270 280 290 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG 300 310 320 330 340 350 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE 360 370 380 390 400 410 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|527 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH 420 430 440 450 460 470 280 mKIAA1 SISRLAPFRK :::::::::: gi|527 SISRLAPFRK 480 >>gi|149046409|gb|EDL99302.1| similar to Rho guanine nuc (484 aa) initn: 1881 init1: 1881 opt: 1881 Z-score: 2175.4 bits: 411.1 E(): 1.8e-112 Smith-Waterman score: 1881; 100.000% identity (100.000% similar) in 280 aa overlap (1-280:205-484) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|149 NHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKY 180 190 200 210 220 230 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 240 250 260 270 280 290 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG 300 310 320 330 340 350 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE 360 370 380 390 400 410 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH 420 430 440 450 460 470 280 mKIAA1 SISRLAPFRK :::::::::: gi|149 SISRLAPFRK 480 >>gi|74199612|dbj|BAE41480.1| unnamed protein product [M (484 aa) initn: 1881 init1: 1881 opt: 1881 Z-score: 2175.4 bits: 411.1 E(): 1.8e-112 Smith-Waterman score: 1881; 100.000% identity (100.000% similar) in 280 aa overlap (1-280:205-484) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|741 NHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKY 180 190 200 210 220 230 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 240 250 260 270 280 290 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG 300 310 320 330 340 350 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE 360 370 380 390 400 410 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH 420 430 440 450 460 470 280 mKIAA1 SISRLAPFRK :::::::::: gi|741 SISRLAPFRK 480 >>gi|149046410|gb|EDL99303.1| similar to Rho guanine nuc (608 aa) initn: 1881 init1: 1881 opt: 1881 Z-score: 2174.1 bits: 411.2 E(): 2.2e-112 Smith-Waterman score: 1881; 100.000% identity (100.000% similar) in 280 aa overlap (1-280:329-608) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|149 NHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKY 300 310 320 330 340 350 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 360 370 380 390 400 410 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG 420 430 440 450 460 470 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE 480 490 500 510 520 530 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH 540 550 560 570 580 590 280 mKIAA1 SISRLAPFRK :::::::::: gi|149 SISRLAPFRK 600 >>gi|148682512|gb|EDL14459.1| Rho guanine nucleotide exc (649 aa) initn: 1881 init1: 1881 opt: 1881 Z-score: 2173.7 bits: 411.3 E(): 2.3e-112 Smith-Waterman score: 1881; 100.000% identity (100.000% similar) in 280 aa overlap (1-280:370-649) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|148 NHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKY 340 350 360 370 380 390 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 400 410 420 430 440 450 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG 460 470 480 490 500 510 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE 520 530 540 550 560 570 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH 580 590 600 610 620 630 280 mKIAA1 SISRLAPFRK :::::::::: gi|148 SISRLAPFRK 640 >>gi|109485930|ref|XP_237049.4| PREDICTED: similar to Rh (1212 aa) initn: 1881 init1: 1881 opt: 1881 Z-score: 2170.1 bits: 411.5 E(): 3.6e-112 Smith-Waterman score: 1881; 100.000% identity (100.000% similar) in 280 aa overlap (1-280:933-1212) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|109 NHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELLKY 910 920 930 940 950 960 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 970 980 990 1000 1010 1020 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG 1030 1040 1050 1060 1070 1080 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE 1090 1100 1110 1120 1130 1140 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH 1150 1160 1170 1180 1190 1200 280 mKIAA1 SISRLAPFRK :::::::::: gi|109 SISRLAPFRK 1210 >>gi|74145036|dbj|BAE22216.1| unnamed protein product [M (484 aa) initn: 1873 init1: 1873 opt: 1873 Z-score: 2166.1 bits: 409.4 E(): 6e-112 Smith-Waterman score: 1873; 99.643% identity (99.643% similar) in 280 aa overlap (1-280:205-484) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY ::::::::::::::::::::::::::: :: gi|741 NHPNACVELSRLTKLSKYVYFFEACRLLQRMIDISLDGFLLTPVQKICKYPLQLAELHKY 180 190 200 210 220 230 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 240 250 260 270 280 290 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG 300 310 320 330 340 350 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE 360 370 380 390 400 410 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH 420 430 440 450 460 470 280 mKIAA1 SISRLAPFRK :::::::::: gi|741 SISRLAPFRK 480 >>gi|114580875|ref|XP_525919.2| PREDICTED: Rho guanine n (619 aa) initn: 1781 init1: 1781 opt: 1781 Z-score: 2058.4 bits: 389.9 E(): 6e-106 Smith-Waterman score: 1781; 93.929% identity (99.286% similar) in 280 aa overlap (1-280:340-619) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|114 NHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKY 310 320 330 340 350 360 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 THPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 370 380 390 400 410 420 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :.::::::::::::.::::::::::.:::::::::::::::::::::::: :::::.::: gi|114 IYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDG 430 440 450 460 470 480 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE ::::::::.::::::.::.::::::::.::::::::::::::::::::.::::::::::: gi|114 KDRDLHVSIKNAFRLHCGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITE 490 500 510 520 530 540 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH ::::::::::::::.:::::::::: ::::.:::.::.::::::::::::::::::.::: gi|114 LQRKQAMLNASKQQVTGKPKAVGRPCYLTRQKHPALPSSRPQQQVLVLAEPRRKPSTFWH 550 560 570 580 590 600 280 mKIAA1 SISRLAPFRK :::::::::: gi|114 SISRLAPFRK 610 >>gi|6807748|emb|CAB70681.1| hypothetical protein [Homo (496 aa) initn: 1760 init1: 1760 opt: 1760 Z-score: 2035.4 bits: 385.3 E(): 1.1e-104 Smith-Waterman score: 1760; 93.214% identity (98.929% similar) in 280 aa overlap (1-280:217-496) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|680 NHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKY 190 200 210 220 230 240 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 THPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 250 260 270 280 290 300 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :.::::::::::::.::::::::::.:::::::::::::::::::::::: :::::.::: gi|680 IYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDG 310 320 330 340 350 360 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE ::::::::.::::::. :.::::::::.::::::::::::::::::::.::::::::::: gi|680 KDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITE 370 380 390 400 410 420 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH ::::::::::::::.:::::::::: ::::.:::.::..:::::::::::::::::.::: gi|680 LQRKQAMLNASKQQVTGKPKAVGRPCYLTRQKHPALPSNRPQQQVLVLAEPRRKPSTFWH 430 440 450 460 470 480 280 mKIAA1 SISRLAPFRK :::::::::: gi|680 SISRLAPFRK 490 >>gi|62702208|gb|AAX93134.1| unknown [Homo sapiens] (547 aa) initn: 1760 init1: 1760 opt: 1760 Z-score: 2034.9 bits: 385.3 E(): 1.2e-104 Smith-Waterman score: 1760; 93.214% identity (98.929% similar) in 280 aa overlap (1-280:268-547) 10 20 30 mKIAA1 MIDISLDGFLLTPVQKICKYPLQLAELLKY :::::::::::::::::::::::::::::: gi|627 NHPNACVELSRLTKLSKYVYFFEACRLLQKMIDISLDGFLLTPVQKICKYPLQLAELLKY 240 250 260 270 280 290 40 50 60 70 80 90 mKIAA1 THPQHRDFKNVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL :::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|627 THPQHRDFKDVEAALHAMKNVAQLINERKRRLENIDKIAQWQSSIEDWEGEDLLVRSSEL 300 310 320 330 340 350 100 110 120 130 140 150 mKIAA1 IHSGELTRVTQPQARSQQRMFFLFDRQLIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDG :.::::::::::::.::::::::::.:::::::::::::::::::::::: :::::.::: gi|627 IYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDG 360 370 380 390 400 410 160 170 180 190 200 210 mKIAA1 KDRDLHVSVKNAFRLYCGTTGDSHLLCARKPEQKQRWLKAFAREREQVRLDQETGFSITE ::::::::.::::::. :.::::::::.::::::::::::::::::::.::::::::::: gi|627 KDRDLHVSIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQLDQETGFSITE 420 430 440 450 460 470 220 230 240 250 260 270 mKIAA1 LQRKQAMLNASKQQATGKPKAVGRPGYLTRHKHPSLPASRPQQQVLVLAEPRRKPSNFWH ::::::::::::::.:::::::::: ::::.:::.::..:::::::::::::::::.::: gi|627 LQRKQAMLNASKQQVTGKPKAVGRPCYLTRQKHPALPSNRPQQQVLVLAEPRRKPSTFWH 480 490 500 510 520 530 280 mKIAA1 SISRLAPFRK :::::::::: gi|627 SISRLAPFRK 540 280 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 18:29:22 2009 done: Thu Mar 12 18:34:52 2009 Total Scan time: 769.340 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]