FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1778.ptfa, 227 aa vs ./tmplib.26680 library 1768790 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.1152+/-0.00644; mu= -2.7489+/- 0.430 mean_var=209.0758+/-49.898, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.0887 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1317 ( 418 res) mbp02166 ( 418) 602 88 4.7e-19 >>mKIAA1317 ( 418 res) mbp02166 (418 aa) initn: 735 init1: 514 opt: 602 Z-score: 434.4 bits: 88.5 E(): 4.7e-19 Smith-Waterman score: 682; 52.863% identity (64.516% ungapped) in 227 aa overlap (1-227:85-270) 10 20 30 mKIAA1 LVLPDYFPERSRLQREAEYFELPELVRRLG .::::.::::.::.::::::.::.::. : mKIAA1 DLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPERGRLKREAEYFQLPDLVKLL- 60 70 80 90 100 110 40 50 60 70 80 90 mKIAA1 APQQPGPGPPPPHSRRGVHKEGSLGDELLPLGYAEPEPQEGASAGAPSPTLELASRSPSG ::.. .: ::. . : :: :. . mKIAA1 APEDVKQSP----------------DEFCHSDF------EDASQGSDTR----------- 120 130 140 100 110 120 130 140 150 mKIAA1 GAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGRDAQADAKFRRVARITVCGKTSLAKEV . ::. : .:. :.::.::::: :.::..::::::::: :: :::. :::::: mKIAA1 -----ICPPSSLLPHDRKWGFITVGYRGSCTLGREGQADAKFRRVPRILVCGRISLAKEV 150 160 170 180 190 160 170 180 190 200 210 mKIAA1 FGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFDKLSESGFHMVACSSTGTCAFASSTDQ ::.:::::::::: :::::::.::::. ::.::: ::: :::::::.:. : .:... mKIAA1 FGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSVTASFVNQ--Y 200 210 220 230 240 250 220 mKIAA1 SEDKIWTSYTEYVFCRE .:::::.::::::: :: mKIAA1 TEDKIWSSYTEYVFYREPSRWSSSHCDCCCKNGKGDKGESGTSCNDLSTSSCDSQSEASS 260 270 280 290 300 310 227 residues in 1 query sequences 1768790 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:52:59 2006 done: Mon Mar 27 10:52:59 2006 Scan time: 0.410 Display time: 0.000 Function used was FASTA [version 3.4t11 Apr 17, 2002]