FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4030.ptfa, 681 aa
 vs ./tmplib.26680 library

1768336 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.0892+/-0.00538; mu= 9.8419+/- 0.360
 mean_var=129.5884+/-30.518, 0's: 0 Z-trim: 2  B-trim: 42 in 1/35
 Lambda= 0.1127

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0212  ( 674 res)   mpm02229                   ( 674)  507   94   5e-20


>>mKIAA0212  ( 674 res)   mpm02229                        (674 aa)
 initn: 738 init1: 338 opt: 507  Z-score: 451.9  bits: 94.0 E(): 5e-20
Smith-Waterman score: 739;  42.034% identity (44.286% ungapped) in 295 aa overlap (3-285:346-637)

                                           10        20        30  
mKIAA4                             EYARKALDFLWEKRQRSSNLVGVTINIHTGDW
                                     ::.:.  ::. :. ...:.: ..::.:: :
mKIAA0 NETCTAGAGSLLVEFGILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHW
         320       330       340       350       360       370     

             40        50        60        70                   80 
mKIAA4 VRKDSGVGAGIDSYYEYLLKAYVLLGDDSFLERFNTHYDAIMRYISQ-----------PP
       : :.::.:::.::.::::::.:.:.:.   :: ::. :..:. :. .           ::
mKIAA0 VGKQSGLGAGLDSFYEYLLKSYILFGEKEDLEMFNAAYQSIQSYLRRGREACNEGEGDPP
         380       390       400       410       420       430     

              90       100       110       120       130       140 
mKIAA4 LLLDVHIHKPMLNARTWMDALLAFFPGLQVLKGDIRPAIETHEMLYQVIKKHNFLPEAFT
       : ..:.. . .:   ::.:.: ::::::::: ::.. ::  : . : . :... ::: ..
mKIAA0 LYVNVNMFSGQL-MNTWIDSLQAFFPGLQVLIGDVEDAICLHAFYYAIWKRYGALPERYN
         440        450       460       470       480       490    

             150        160       170       180       190       200
mKIAA4 TDFRVHWAQ-HPLRPEFAESTYFLYKATGDPYYLEVGKTLIENLNKYARVPCGFAAMKDV
        ....  .  .:::::..::::.::.:: .:.::.::  ....:.::..: ::.:... :
mKIAA0 WQLQAPDVLFYPLRPELVESTYLLYQATKNPFYLHVGMDILQSLEKYTKVKCGYATLHHV
          500       510       520       530       540       550    

              210       220       230       240       250       260
mKIAA4 RTGSHEDRMDSFFLAEMFKYLYLLFADKEDIIFDIEDYIFTTEAHLLPLWLSTTNRSISK
          :.::::.::::.:  ::::::: ... .  .   :.::::.:.. .  .   : .  
mKIAA0 IDKSKEDRMESFFLSETCKYLYLLFDEENPVHKSGTRYMFTTEGHIISV--DKRLRELPW
          560       570       580       590       600         610  

              270       280       290       300       310       320
mKIAA4 KNTTSEYTELDDSNFDWTCPNTQILFPNDPLYAQSIREPLKNVVDKSCPRGIIRVEESFR
       :.  ::  : :. .     :..: :                                   
mKIAA0 KEFFSEDGERDQEEKFVHRPKSQELRVINSSSNCNRVPDERRYSLPLKSIYMRQIDQMVG
            620       630       640       650       660       670  




681 residues in 1 query   sequences
1768336 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:40 2006 done: Mon Mar 27 10:59:41 2006
 Scan time:  0.850 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]