FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1551.ptfa, 1525 aa
 vs ./tmplib.26680 library

1767492 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.5304+/-0.00571; mu= 6.0998+/- 0.379
 mean_var=178.8110+/-42.552, 0's: 0 Z-trim: 3  B-trim: 2 in 1/35
 Lambda= 0.0959

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0827  ( 1033 res)   mbg05617                  (1033)  199   41  0.0017


>>mKIAA0827  ( 1033 res)   mbg05617                       (1033 aa)
 initn: 100 init1:  63 opt: 199  Z-score: 155.2  bits: 40.9 E(): 0.0017
Smith-Waterman score: 199;  21.011% identity (22.965% ungapped) in 376 aa overlap (35-390:581-944)

           10        20        30        40        50        60    
mKIAA1 MNWNTKQENVPKPPPYSKTQSSILQHFLMTSTTSQSSFNYSPHNQEASQTSFNYSLHNQE
                                     :  .:.:. .::.    ::::   : . : 
mKIAA0 LQSGNFLQQSSHSQAQLFHPQNPIADAQNLSQETQGSIFHSPNPIVHSQTSTASSEQLQP
              560       570       580       590       600       610

           70        80           90       100       110       120 
mKIAA1 ACMYSGNSNSVSQPLLSGRNYITPQ---TQISVSNMPTRTIVASQSSMERVVSTNGKGPQ
       . ..: :. .: :     ..  .:.   .: :..:. : : ::.. ..   .. :. .: 
mKIAA0 SMFHSQNTIAVLQGSSVPQDQQSPNIFLSQSSINNLQTNT-VAQEEQISFFAAQNSISPL
              620       630       640       650        660         

             130       140       150       160       170        180
mKIAA1 QPNHNLQTVSSGIMQNVWLPSHTEATISHNPDGGTNMPYMHPPQNQLVTSDTYSM-QLQM
       : . :  : ... .:.    :: .. :  . ..  ..  .  ::  : .     : : :.
mKIAA0 QSTSN--TEQQAAFQQQPPISHIQTPILSQEQAQPSQQGLFQPQVALGSLPPNPMPQNQQ
     670         680       690       700       710       720       

              190       200       210       220       230       240
mKIAA1 APLHSGKVPMTHQGSQGLNHFIPDQLVDWTQYTSNELSYPEYRPPPKQYSYILPATTSLQ
       .:. . . :..     :..   :.:     :  ... .  . .   .: : ..   ... 
mKIAA0 GPIFQTQRPIV-----GMQSNSPSQE---QQQQQQQQQQQQQQQQQQQQSILFSNQNAMA
       730            740          750       760       770         

              250       260       270         280       290        
mKIAA1 VKNNQLPTYTQSLQSKHSVPLSSHQYAAEA--SKRLSALPYSCRYENQHVQNAQPVSKHL
       .  .:     . . : .. :..:..   ..   .. .  :.. . . .. :: ::. . :
mKIAA0 TMASQKQPPPNMMFSPNQNPMASQEQQNQSIFHQQSNMAPMNQEQQPMQFQN-QPTVSSL
     780       790       800       810       820       830         

          300         310       320       330       340            
mKIAA1 ----PM--EVPQSSEVHSSEKKKDTYRGFKQQWQNPNEKVSIGQFSEVKINIKQP---YS
           :   : ::.:  ::: . . .  . ..: :. .  .: ...: .. .:.::    :
mKIAA0 QNPGPTQSESPQTSLFHSSPQIQLVQGSPSSQDQQVTLFLSPASMSALQTSINQPDMQQS
      840       850       860       870       880       890        

     350         360       370          380       390       400    
mKIAA1 ESVRPSGD--GVQALVQNNQEKRKYTYNPN---TNQVIDTNATKEKLVRDIKSLVEIKKK
           :...  :.:. ... : .    .: .    ::. .. .....              
mKIAA0 PLYSPQNNIPGIQGSTSSPQPQATLFHNTTGGTINQIQNSPGSSQQTSGMFLFGIQNNCS
      900       910       920       930       940       950        

          410       420       430       440       450       460    
mKIAA1 FSELARKIKINKSLLMAAGCSKTANTSYTEPIQHSEFSAKEMSAKNGNDCSMELLATCLS
                                                                   
mKIAA0 QLLTSGPATLPDQLMAINQQGQPQNEGQSSVTTLLSQQMPETSPLASSVNSSQNMEKIDL
      960       970       980       990      1000      1010        




1525 residues in 1 query   sequences
1767492 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:47:57 2006 done: Mon Mar 27 10:47:58 2006
 Scan time:  1.220 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]