FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1857.ptfa, 101 aa
 vs ./tmplib.26680 library

1768916 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1621+/-0.00359; mu= 10.5050+/- 0.242
 mean_var=55.0815+/-12.328, 0's: 0 Z-trim: 2  B-trim: 30 in 1/35
 Lambda= 0.1728

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0976  ( 470 res)   mfj12230                   ( 470)  247   69 1.8e-13


>>mKIAA0976  ( 470 res)   mfj12230                        (470 aa)
 initn: 238 init1: 238 opt: 247  Z-score: 334.1  bits: 68.9 E(): 1.8e-13
Smith-Waterman score: 247;  52.632% identity (52.632% ungapped) in 57 aa overlap (33-89:57-113)

             10        20        30        40        50        60  
mKIAA1 HHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQPKV
                                     .: : ::.::: . :.:: .:.. ::::. 
mKIAA0 IAKILEMYLSRFLSIHALWVTVSSVMQPYLFVWGHYDVCKSLIYTEEGKVWDYTACQPES
         30        40        50        60        70        80      

             70        80        90       100                      
mKIAA1 MRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH                     
         .  :.:::..:  :::::::: ::.                                 
mKIAA0 TDMTKYLKVKLDPPDITCGDPPESFCAMGNPYMCNNECDASTPELAHPPELMFDFEGRHP
         90       100       110       120       130       140      




101 residues in 1 query   sequences
1768916 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:54:37 2006 done: Mon Mar 27 10:54:37 2006
 Scan time:  0.310 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]