# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg20504.fasta.nr -Q ../query/mKIAA1857.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1857, 101 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921285 sequences Expectation_n fit: rho(ln(x))= 4.3222+/-0.000176; mu= 8.5060+/- 0.010 mean_var=53.5512+/-10.349, 0's: 40 Z-trim: 42 B-trim: 0 in 0/67 Lambda= 0.175263 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|123858305|emb|CAM16245.1| netrin G2 [Mus muscul ( 430) 521 139.2 4.3e-31 gi|16923267|dbj|BAB71994.1| Netrin-G2a [Mus muscul ( 530) 521 139.3 5e-31 gi|16923271|dbj|BAB71996.1| Netrin-G2c [Mus muscul ( 564) 521 139.3 5.3e-31 gi|16923269|dbj|BAB71995.1| Netrin-G2b [Mus muscul ( 589) 521 139.3 5.5e-31 gi|149039167|gb|EDL93387.1| netrin G2 (predicted), ( 530) 514 137.5 1.7e-30 gi|149039165|gb|EDL93385.1| netrin G2 (predicted), ( 564) 514 137.5 1.8e-30 gi|149039166|gb|EDL93386.1| netrin G2 (predicted), ( 589) 514 137.5 1.9e-30 gi|119608400|gb|EAW87994.1| netrin G2, isoform CRA ( 420) 509 136.2 3.5e-30 gi|19073381|gb|AAL84788.1|AF475079_1 laminet-2A [M ( 530) 510 136.5 3.5e-30 gi|37181438|gb|AAQ88532.1| LHLL9381 [Homo sapiens] ( 422) 509 136.2 3.5e-30 gi|114627302|ref|XP_520330.2| PREDICTED: similar t ( 422) 509 136.2 3.5e-30 gi|109109974|ref|XP_001104957.1| PREDICTED: simila ( 430) 509 136.2 3.5e-30 gi|34922565|sp|Q8R4F1.1|NTNG2_MOUSE RecName: Full= ( 589) 510 136.5 3.8e-30 gi|119608401|gb|EAW87995.1| netrin G2, isoform CRA ( 480) 509 136.2 3.8e-30 gi|73967710|ref|XP_548405.2| PREDICTED: similar to ( 521) 509 136.2 4.1e-30 gi|55958585|emb|CAI16126.1| netrin G2 [Homo sapien ( 522) 509 136.2 4.1e-30 gi|55958584|emb|CAI16125.1| netrin G2 [Homo sapien ( 530) 509 136.2 4.1e-30 gi|114627300|ref|XP_001167978.1| PREDICTED: netrin ( 530) 509 136.2 4.1e-30 gi|109109972|ref|XP_001105036.1| PREDICTED: simila ( 530) 509 136.2 4.1e-30 gi|34922606|sp|Q96CW9.1|NTNG2_HUMAN RecName: Full= ( 530) 509 136.2 4.1e-30 gi|194033717|ref|XP_001929426.1| PREDICTED: simila ( 531) 509 136.2 4.1e-30 gi|73967716|ref|XP_859770.1| PREDICTED: similar to ( 533) 509 136.2 4.2e-30 gi|73967714|ref|XP_859737.1| PREDICTED: similar to ( 534) 509 136.2 4.2e-30 gi|73967712|ref|XP_859704.1| PREDICTED: similar to ( 567) 509 136.3 4.4e-30 gi|73967718|ref|XP_849811.1| PREDICTED: similar to ( 592) 509 136.3 4.5e-30 gi|148745054|gb|AAI42501.1| NTNG2 protein [Bos tau ( 531) 498 133.5 2.8e-29 gi|194225956|ref|XP_001917328.1| PREDICTED: simila ( 520) 496 132.9 4e-29 gi|224073582|ref|XP_002198965.1| PREDICTED: simila ( 527) 436 117.8 1.5e-24 gi|224073584|ref|XP_002198972.1| PREDICTED: simila ( 589) 436 117.8 1.6e-24 gi|118099333|ref|XP_415454.2| PREDICTED: similar t ( 527) 434 117.3 2.1e-24 gi|125823138|ref|XP_688497.2| PREDICTED: novel pro ( 531) 343 94.3 1.8e-17 gi|169158325|emb|CAQ13421.1| novel protein similar ( 343) 337 92.6 3.7e-17 gi|47219860|emb|CAF97130.1| unnamed protein produc ( 92) 330 90.4 4.6e-17 gi|47210194|emb|CAF90022.1| unnamed protein produc ( 520) 267 75.0 1.1e-11 gi|194211060|ref|XP_001492694.2| PREDICTED: netrin ( 438) 261 73.5 2.7e-11 gi|149025740|gb|EDL81983.1| similar to netrin G1 ( ( 438) 261 73.5 2.7e-11 gi|149025741|gb|EDL81984.1| similar to netrin G1 ( ( 438) 261 73.5 2.7e-11 gi|149025737|gb|EDL81980.1| similar to netrin G1 ( ( 460) 261 73.5 2.8e-11 gi|119224042|gb|AAI26500.1| Hypothetical protein L ( 461) 261 73.5 2.8e-11 gi|194036584|ref|XP_001928603.1| PREDICTED: netrin ( 477) 261 73.5 2.9e-11 gi|149025736|gb|EDL81979.1| similar to netrin G1 ( ( 480) 261 73.5 2.9e-11 gi|149025739|gb|EDL81982.1| similar to netrin G1 ( ( 483) 261 73.5 2.9e-11 gi|194036582|ref|XP_001928611.1| PREDICTED: netrin ( 536) 261 73.5 3.1e-11 gi|149025738|gb|EDL81981.1| similar to netrin G1 ( ( 539) 261 73.5 3.2e-11 gi|55664951|emb|CAH73828.1| netrin G1 [Homo sapien ( 364) 259 72.9 3.3e-11 gi|31874278|emb|CAD98143.1| hypothetical protein [ ( 365) 259 72.9 3.3e-11 gi|22539630|gb|AAH30220.1| Netrin G1 [Homo sapiens ( 438) 259 73.0 3.8e-11 gi|37181855|gb|AAQ88731.1| YLSR571 [Homo sapiens] ( 438) 259 73.0 3.8e-11 gi|55664956|emb|CAH73833.1| netrin G1 [Homo sapien ( 460) 259 73.0 4e-11 gi|55664952|emb|CAH73829.1| netrin G1 [Homo sapien ( 480) 259 73.0 4.1e-11 >>gi|123858305|emb|CAM16245.1| netrin G2 [Mus musculus] (430 aa) initn: 521 init1: 521 opt: 521 Z-score: 714.5 bits: 139.2 E(): 4.3e-31 Smith-Waterman score: 521; 100.000% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::::::::::::::::::::::::::::::::::::::::: gi|123 MLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|123 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDREDE 50 60 70 80 90 100 >>gi|16923267|dbj|BAB71994.1| Netrin-G2a [Mus musculus] (530 aa) initn: 521 init1: 521 opt: 521 Z-score: 713.3 bits: 139.3 E(): 5e-31 Smith-Waterman score: 521; 100.000% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::::::::::::::::::::::::::::::::::::::::: gi|169 MLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|169 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDREDE 50 60 70 80 90 100 >>gi|16923271|dbj|BAB71996.1| Netrin-G2c [Mus musculus] (564 aa) initn: 521 init1: 521 opt: 521 Z-score: 712.9 bits: 139.3 E(): 5.3e-31 Smith-Waterman score: 521; 100.000% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::::::::::::::::::::::::::::::::::::::::: gi|169 MLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|169 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDREDE 50 60 70 80 90 100 >>gi|16923269|dbj|BAB71995.1| Netrin-G2b [Mus musculus] (589 aa) initn: 521 init1: 521 opt: 521 Z-score: 712.7 bits: 139.3 E(): 5.5e-31 Smith-Waterman score: 521; 100.000% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::::::::::::::::::::::::::::::::::::::::: gi|169 MLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|169 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDREDE 50 60 70 80 90 100 >>gi|149039167|gb|EDL93387.1| netrin G2 (predicted), iso (530 aa) initn: 514 init1: 514 opt: 514 Z-score: 703.7 bits: 137.5 E(): 1.7e-30 Smith-Waterman score: 514; 98.592% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::.:::::::::::::::::::::::::::::::::::::: gi|149 MLHLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|149 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDREDE 50 60 70 80 90 100 >>gi|149039165|gb|EDL93385.1| netrin G2 (predicted), iso (564 aa) initn: 514 init1: 514 opt: 514 Z-score: 703.4 bits: 137.5 E(): 1.8e-30 Smith-Waterman score: 514; 98.592% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::.:::::::::::::::::::::::::::::::::::::: gi|149 MLHLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|149 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDREDE 50 60 70 80 90 100 >>gi|149039166|gb|EDL93386.1| netrin G2 (predicted), iso (589 aa) initn: 514 init1: 514 opt: 514 Z-score: 703.1 bits: 137.5 E(): 1.9e-30 Smith-Waterman score: 514; 98.592% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::.:::::::::::::::::::::::::::::::::::::: gi|149 MLHLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|149 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDREDE 50 60 70 80 90 100 >>gi|119608400|gb|EAW87994.1| netrin G2, isoform CRA_a [ (420 aa) initn: 509 init1: 509 opt: 509 Z-score: 698.3 bits: 136.2 E(): 3.5e-30 Smith-Waterman score: 509; 97.183% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::.:::::::::::.:::::::::::::::::::::::::: gi|119 MLHLLALFLHCLPLASGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|119 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEE 50 60 70 80 90 100 >>gi|19073381|gb|AAL84788.1|AF475079_1 laminet-2A [Mus m (530 aa) initn: 510 init1: 510 opt: 510 Z-score: 698.3 bits: 136.5 E(): 3.5e-30 Smith-Waterman score: 510; 98.592% identity (98.592% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP :::::::::::::::::::::::::::::::::::::::: gi|190 MLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQS 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|190 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDREDE 50 60 70 80 90 100 >>gi|37181438|gb|AAQ88532.1| LHLL9381 [Homo sapiens] (422 aa) initn: 509 init1: 509 opt: 509 Z-score: 698.2 bits: 136.2 E(): 3.5e-30 Smith-Waterman score: 509; 97.183% identity (100.000% similar) in 71 aa overlap (20-90:1-71) 10 20 30 40 50 60 mKIAA1 PHHHFSSAALGPTHSDCAAMLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQP ::.:::::::::::.:::::::::::::::::::::::::: gi|371 MLHLLALFLHCLPLASGDYDICKSWVTTDEGPTWEFYACQP 10 20 30 40 70 80 90 100 mKIAA1 KVMRLKDYVKVKVEPSGITCGDPPERFCSHVSHPMASLSLH :::::::::::::::::::::::::::::: gi|371 KVMRLKDYVKVKVEPSGITCGDPPERFCSHENPYLCSNECDASNPDLAHPPRLMFDKEEE 50 60 70 80 90 100 101 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 04:09:10 2009 done: Mon Mar 16 04:12:47 2009 Total Scan time: 508.270 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]