FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1085.ptfa, 595 aa vs ./tmplib.26680 library 1768422 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 13.3047+/-0.00796; mu= -26.4404+/- 0.521 mean_var=500.2507+/-123.025, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.0573 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0697 ( 1119 res) mpm11062 (1119) 629 67 1.2e-11 >>mKIAA0697 ( 1119 res) mpm11062 (1119 aa) initn: 977 init1: 258 opt: 629 Z-score: 301.3 bits: 66.7 E(): 1.2e-11 Smith-Waterman score: 939; 30.692% identity (37.108% ungapped) in 694 aa overlap (1-592:426-1101) 10 20 30 mKIAA1 GGTFSPSPNTWGPFPVRPVNPGNTSSSPKH :::: :. .:::::::::..:. ...::: mKIAA0 AYPPPQFAHALLAAQTFQQIRPPRLPMTHFGGTFPPAQSTWGPFPVRPLSPARATNSPKP 400 410 420 430 440 450 40 50 60 70 80 90 mKIAA1 NNTARLPNQNGPVLPSESPGLATTGCPITVSSVVAASQQLCMTNSRTPSSVRKQLFACVP . . : :::. .: : :.. :.:: ..: ..: . :::.:::. : mKIAA0 HMVPRHSNQNSSGSQVNSAGSLTSSPTTTASSSASAVPGTTSNGSPSSPSVRRQLFVTVV 460 470 480 490 500 510 100 110 120 130 140 mKIAA1 KTS-PPATVISSVTSTSSSLPSVSSTSITSG--H--VTTTFMPAPTQVPLSSQK---VES ::: .:......:..:. :. .. . .. : :.. :.: : . .. .. mKIAA0 KTSNATTTTVTTTASNNSTAPTNATYPMPTAKEHYPVSSPSSPSPPAQPGGVSRNSPLDC 520 530 540 550 560 570 150 160 170 180 190 mKIAA1 FSVIPPPKEKVSTQDQ---PLTNLCTPSPAATSCNSSASNTSGAPEAHPSSTP--PPPPG :. : ..: :. :... . : .: .:..:. .. . :.:.: : :: mKIAA0 GSASPNKGASASEQEASSPPVVEPANSRPPHSSSSSGSSSGHSTQQQPPGSVPQEPRPPL 580 590 600 610 620 630 200 210 220 230 240 250 mKIAA1 NTQEEGQPSKASDLSPV---SMPFASNSETAPLTLASPRLVAADNRDTGSLPQLTVPAPR . .. .:. . :. : : : : :::.: :. . .. :.. .:: : mKIAA0 QQSQVPSPDVRMTVPPTATSSAPVAVPS-TAPVTYPMPQTQMGCSQP----PKMEAPAIR 640 650 660 670 680 690 260 270 280 290 300 310 mKIAA1 VSHRMQPRGSFYSVVPNAT-MHQDPQSIFVTNPVPLTPPQGPPAAVQLSSAVNIMNGSQV : : ...:. : . .: : : . :.. :..::: :... ... : mKIAA0 -----PP--SHATAAPHKTPAPVQSSSASVLNVNHIKRPHSVPSSVQLPSTLSTQSACQN 700 710 720 730 740 320 330 340 350 360 370 mKIAA1 HINPANKSLQPTFGPATLFNHFSSLFDSGQVPANQGWGDGPL-PSRVAADASFTVQSAFL ..:::: . :.:. :. ::.::... . :. :: ::. :. . .. .. .:..: mKIAA0 SVHPANKPVAPNFSAPLPFGPFSTLFENNPTNAHAFWG-GPVVSSQSTPESMLSGKSSYL 750 760 770 780 790 800 380 390 400 410 420 430 mKIAA1 SNSVLGHLENVHPDNSKAPGFRPPSQRVSTSPVGLPSID-PSGNSPSAAAPLTSF-SGIP :: : . :.::::::::: :: . :: :. ..: : :. ... : .: :.. mKIAA0 PNSDPLH----QSDTSKAPGFRPPLQRPAPSPSGIVNMDTPYGSVTPSSTHLGNFASSLS 810 820 830 840 850 440 450 460 mKIAA1 GTRVFLQG-P---APVG-TPS---FNRQHFSP----HPWTSASNTC-------------- : ... : : ::.: .:. :::::::: : .:::: mKIAA0 GGQMYGPGAPLGGAPLGGAPTAANFNRQHFSPLSLLTPCSSASNESPAQSVSSGVRAPSP 860 870 880 890 900 910 470 480 mKIAA1 --------------------------------------------GTSFVAPVGHGGIWSF :... . :::.::::: mKIAA0 APSSVPLGSEKPSSVSQDRKVPVPIGTERSARIRQTGTSAPSVIGSNLSTSVGHSGIWSF 920 930 940 950 960 970 490 500 510 520 530 mKIAA1 -GVNAMSEGLSGWSQSVIGNHPMHQQLSDPSTFSQHQPMERDDSGMVAPTNIFHQ--PMG :... .. .. : . .:: .:. .:::..::::: ::::..:.:.:.. ::: : : mKIAA0 EGIGGNQDKVD-WCNPGMGNPMIHRPMSDPGVFSQHQAMERDSTGIVTPSGTFHQHVPAG 980 990 1000 1010 1020 1030 540 550 560 570 580 mKIAA1 ---------LPISMYGGTIIPSHPQLADVPGGPLFNGLHNPDPAWNPMIKVIQNSAECTE .:.:.::....: .:: :::.::: :. .:.:: .::....:.: . mKIAA0 YMDFPKVGSMPFSVYGNAMLPPVAPIADGAGGPIFNGPHSAEPSWNSLIKMVSSSTENNG 1040 1050 1060 1070 1080 1090 590 mKIAA1 AQQVKQA : : mKIAA0 PQTVWTGPWAPHMNSVHMNQLG 1100 1110 595 residues in 1 query sequences 1768422 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:43 2006 done: Mon Mar 27 10:35:44 2006 Scan time: 0.780 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]