FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0193.ptfa, 439 aa
 vs ./tmplib.26680 library

1768578 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.4792+/-0.00416; mu= 16.9172+/- 0.279
 mean_var=81.9780+/-18.747, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1417

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4024  ( 188 res)   mpj00521                   ( 188)  743  161 7.3e-41


>>mKIAA4024  ( 188 res)   mpj00521                        (188 aa)
 initn: 598 init1: 487 opt: 743  Z-score: 826.0  bits: 160.8 E(): 7.3e-41
Smith-Waterman score: 743;  62.712% identity (64.162% ungapped) in 177 aa overlap (34-209:7-180)

            10        20        30        40        50        60   
mKIAA0 RPQLRSRSISTVGPGWSRLLGRMSGAPPSYSFVALPPRAKDGLVVFGKNSARPRDEVQEV
                                     .:::::: .  . :.::::: :  ::::::
mKIAA4                         EPYSCDTFVALPPATVGNRVIFGKNSDRLFDEVQEV
                                       10        20        30      

            70         80        90       100       110       120  
mKIAA0 VYFPAVDH-DAESKVECTYISIDQVPRTHAIVISRPAWLWGAEMGANEHGVCIANEAINA
       .: ::. : : :....:::: .::::.:.:.:.::::::::::::::::::::.:::. .
mKIAA4 IYCPAAVHNDLEKRLKCTYIEVDQVPETYAVVLSRPAWLWGAEMGANEHGVCIGNEAVWG
         40        50        60        70        80        90      

            130       140       150       160       170       180  
mKIAA0 REPAAETEALLGMDLVRLGLERGTTAKEALDIIVSLLDEHGQGGNYYEDAHSCHSFQSAY
       ::  .. :::::::::::::::. ::..:::.::.::...:::::  :  .   :. ...
mKIAA4 REDISKEEALLGMDLVRLGLERADTAEKALDVIVDLLEKYGQGGNCAEGKE--FSYYNSF
        100       110       120       130       140         150    

            190       200       210       220       230       240  
mKIAA0 LLVDRDEAWVLETVGKYWAAERITEGVRCICNHLSLATKLDEEHPELRTYAQSQGWWTGD
       :..::.:::.::: ::::::::. .::                                 
mKIAA4 LIADRNEAWILETSGKYWAAERV-QGVNSYLQFGS                         
          160       170        180                                 




439 residues in 1 query   sequences
1768578 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:14:16 2006 done: Mon Mar 27 10:14:16 2006
 Scan time:  0.640 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]