# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg19413.fasta.nr -Q ../query/mFLJ00023.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mFLJ00023, 164 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921370 sequences Expectation_n fit: rho(ln(x))= 4.9431+/-0.000181; mu= 8.2383+/- 0.010 mean_var=73.9070+/-15.119, 0's: 42 Z-trim: 43 B-trim: 2683 in 1/64 Lambda= 0.149187 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|47847384|dbj|BAD21364.1| mFLJ00023 protein [Mus ( 164) 1116 248.5 3.2e-64 gi|13633926|sp|Q9D125.1|RT25_MOUSE RecName: Full=2 ( 171) 1116 248.6 3.3e-64 gi|12850405|dbj|BAB28705.1| unnamed protein produc ( 171) 1105 246.2 1.7e-63 gi|81918195|sp|Q4QR80.1|RT25_RAT RecName: Full=28S ( 171) 1074 239.5 1.7e-61 gi|149728248|ref|XP_001491213.1| PREDICTED: simila ( 173) 1013 226.4 1.6e-57 gi|13633894|sp|P82663.1|RT25_HUMAN RecName: Full=2 ( 173) 1005 224.7 5.2e-57 gi|10440375|dbj|BAB15723.1| FLJ00023 protein [Homo ( 192) 1005 224.7 5.6e-57 gi|73984967|ref|XP_533729.2| PREDICTED: similar to ( 287) 1002 224.2 1.2e-56 gi|109098041|ref|XP_001091560.1| PREDICTED: simila ( 202) 994 222.4 3e-56 gi|108935900|sp|P82669.2|RT25_BOVIN RecName: Full= ( 173) 970 217.1 9.7e-55 gi|126336453|ref|XP_001376586.1| PREDICTED: hypoth ( 173) 958 214.6 5.8e-54 gi|149412648|ref|XP_001506359.1| PREDICTED: hypoth ( 173) 948 212.4 2.6e-53 gi|197128890|gb|ACH45388.1| putative mitochondrial ( 171) 902 202.5 2.4e-50 gi|197128891|gb|ACH45389.1| putative mitochondrial ( 171) 893 200.6 9.3e-50 gi|118097109|ref|XP_414461.2| PREDICTED: hypotheti ( 173) 891 200.1 1.3e-49 gi|77748167|gb|AAI06568.1| LOC733400 protein [Xeno ( 172) 885 198.8 3.1e-49 gi|146327086|gb|AAI41733.1| LOC100049746 protein [ ( 173) 879 197.6 7.6e-49 gi|47223193|emb|CAG11328.1| unnamed protein produc ( 172) 860 193.5 1.3e-47 gi|209731242|gb|ACI66490.1| Mitochondrial 28S ribo ( 172) 848 190.9 7.7e-47 gi|209737042|gb|ACI69390.1| Mitochondrial 28S ribo ( 172) 848 190.9 7.7e-47 gi|62204862|gb|AAH92991.1| Zgc:110709 [Danio rerio ( 173) 844 190.0 1.4e-46 gi|116116959|gb|EAA00469.3| AGAP012136-PA [Anophel ( 168) 670 152.6 2.6e-35 gi|194376620|dbj|BAG57456.1| unnamed protein produ ( 145) 645 147.1 9.7e-34 gi|167878045|gb|EDS41428.1| mitochondrial 28S ribo ( 167) 643 146.7 1.4e-33 gi|108884488|gb|EAT48713.1| mitochondrial ribosoma ( 168) 642 146.5 1.7e-33 gi|210094132|gb|EEA42320.1| hypothetical protein B ( 169) 637 145.5 3.6e-33 gi|194188100|gb|EDX01684.1| GE16111 [Drosophila ya ( 167) 629 143.7 1.2e-32 gi|54643127|gb|EAL31871.1| GA12964 [Drosophila pse ( 167) 617 141.2 7e-32 gi|194126834|gb|EDW48877.1| GM17546 [Drosophila se ( 167) 617 141.2 7e-32 gi|193901429|gb|EDW00296.1| GH12785 [Drosophila gr ( 167) 614 140.5 1.1e-31 gi|13633946|sp|Q9VY28.1|RT25_DROME RecName: Full=P ( 167) 610 139.6 2e-31 gi|190649818|gb|EDV47096.1| GG19455 [Drosophila er ( 167) 607 139.0 3.1e-31 gi|215510818|gb|EEC20271.1| ribosomal protein mRpS ( 172) 605 138.6 4.3e-31 gi|72022689|ref|XP_795397.1| PREDICTED: similar to ( 187) 603 138.2 6.1e-31 gi|193580206|ref|XP_001945038.1| PREDICTED: simila ( 167) 598 137.1 1.2e-30 gi|190619560|gb|EDV35084.1| GF22384 [Drosophila an ( 167) 598 137.1 1.2e-30 gi|194157230|gb|EDW72131.1| GK10306 [Drosophila wi ( 167) 598 137.1 1.2e-30 gi|156543332|ref|XP_001607001.1| PREDICTED: simila ( 169) 598 137.1 1.2e-30 gi|48102586|ref|XP_395393.1| PREDICTED: similar to ( 169) 597 136.9 1.4e-30 gi|193912115|gb|EDW10982.1| GI14011 [Drosophila mo ( 167) 594 136.2 2.2e-30 gi|91083589|ref|XP_968607.1| PREDICTED: similar to ( 168) 588 134.9 5.3e-30 gi|95102638|gb|ABF51257.1| mitochondrial 28S ribos ( 167) 585 134.3 8.3e-30 gi|194149436|gb|EDW65127.1| GJ19070 [Drosophila vi ( 167) 554 127.6 8.4e-28 gi|119584622|gb|EAW64218.1| mitochondrial ribosoma ( 101) 538 124.0 6.3e-27 gi|212508018|gb|EEB11837.1| ribosomal protein S25, ( 176) 480 111.7 5.5e-23 gi|119584621|gb|EAW64217.1| mitochondrial ribosoma ( 112) 470 109.4 1.7e-22 gi|194385044|dbj|BAG60928.1| unnamed protein produ ( 129) 467 108.8 3e-22 gi|158593575|gb|EDP32170.1| 28S ribosomal protein ( 171) 431 101.1 8e-20 gi|198429299|ref|XP_002131443.1| PREDICTED: simila ( 208) 425 99.9 2.3e-19 gi|187032767|emb|CAP28241.1| Hypothetical protein ( 170) 416 97.9 7.5e-19 >>gi|47847384|dbj|BAD21364.1| mFLJ00023 protein [Mus mus (164 aa) initn: 1116 init1: 1116 opt: 1116 Z-score: 1309.2 bits: 248.5 E(): 3.2e-64 Smith-Waterman score: 1116; 100.000% identity (100.000% similar) in 164 aa overlap (1-164:1-164) 10 20 30 40 50 60 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQIMMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|478 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQIMMF 10 20 30 40 50 60 70 80 90 100 110 120 mFLJ00 KNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRFHPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|478 KNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRFHPG 70 80 90 100 110 120 130 140 150 160 mFLJ00 NFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST :::::::::::::::::::::::::::::::::::::::::::: gi|478 NFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST 130 140 150 160 >>gi|13633926|sp|Q9D125.1|RT25_MOUSE RecName: Full=28S r (171 aa) initn: 1116 init1: 1116 opt: 1116 Z-score: 1309.0 bits: 248.6 E(): 3.3e-64 Smith-Waterman score: 1116; 100.000% identity (100.000% similar) in 164 aa overlap (1-164:8-171) 10 20 30 40 50 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNP ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 MPMKGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNP 10 20 30 40 50 60 60 70 80 90 100 110 mFLJ00 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEK 70 80 90 100 110 120 120 130 140 150 160 mFLJ00 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|136 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST 130 140 150 160 170 >>gi|12850405|dbj|BAB28705.1| unnamed protein product [M (171 aa) initn: 1105 init1: 1105 opt: 1105 Z-score: 1296.2 bits: 246.2 E(): 1.7e-63 Smith-Waterman score: 1105; 99.390% identity (99.390% similar) in 164 aa overlap (1-164:8-171) 10 20 30 40 50 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNP :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 MPMKGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNS 10 20 30 40 50 60 60 70 80 90 100 110 mFLJ00 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEK 70 80 90 100 110 120 120 130 140 150 160 mFLJ00 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST 130 140 150 160 170 >>gi|81918195|sp|Q4QR80.1|RT25_RAT RecName: Full=28S rib (171 aa) initn: 1074 init1: 1074 opt: 1074 Z-score: 1260.1 bits: 239.5 E(): 1.7e-61 Smith-Waterman score: 1074; 95.122% identity (98.780% similar) in 164 aa overlap (1-164:8-171) 10 20 30 40 50 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNP :::::::::: ::::::::::.:::::::.::::::::::::::::::::::: gi|819 MPMKGRFPIRRTLQYLGSGDVVFKESVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNP 10 20 30 40 50 60 60 70 80 90 100 110 mFLJ00 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEK :::::.::::::::::::::.:::::::::::::: ::.::::::::::::::::::::: gi|819 WVQIMLFKNMTPSPFLRFYLESGEQVLVDVETKSNTEIVEHIKKILGKKEETLREEELEK 70 80 90 100 110 120 120 130 140 150 160 mFLJ00 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST :::::::::::::::::::::::::::::::::::::::::::::::::.: gi|819 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKANT 130 140 150 160 170 >>gi|149728248|ref|XP_001491213.1| PREDICTED: similar to (173 aa) initn: 1036 init1: 1013 opt: 1013 Z-score: 1189.1 bits: 226.4 E(): 1.6e-57 Smith-Waterman score: 1013; 89.506% identity (98.148% similar) in 162 aa overlap (1-162:8-169) 10 20 30 40 50 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNP ::::::::::.::::::.:::.:::::::.::::::::::::::::::::::: gi|149 MPMKGRFPIRRTLQYLGQGDVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNP 10 20 30 40 50 60 60 70 80 90 100 110 mFLJ00 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEK ::::::::::::::::::::::::::::::::::::::::::::.:::.::::..:: :: gi|149 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKVLGKNEETLKKEEQEK 70 80 90 100 110 120 120 130 140 150 160 mFLJ00 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST .: ::..:::::::::::.:::::::::::::::::::::::::.:.: gi|149 KQLSHPAHFGPRKYCLRECICEVEGQVPCPGLVPLPKEMTGKYKATLRAGAQD 130 140 150 160 170 >>gi|13633894|sp|P82663.1|RT25_HUMAN RecName: Full=28S r (173 aa) initn: 1005 init1: 1005 opt: 1005 Z-score: 1179.8 bits: 224.7 E(): 5.2e-57 Smith-Waterman score: 1005; 90.123% identity (97.531% similar) in 162 aa overlap (1-162:8-169) 10 20 30 40 50 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNP :::::::::..:.::::.:::.:::::::.::::::::::::::::::::::: gi|136 MPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNP 10 20 30 40 50 60 60 70 80 90 100 110 mFLJ00 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEK ::::::::::::::::::::::::::::::::::::::::::.:::::.:::::::: :: gi|136 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEK 70 80 90 100 110 120 120 130 140 150 160 mFLJ00 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST .: ::.::::::::::::.::::::::::.:::::::: ::::::::: gi|136 KQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRGKYKAALKADAQD 130 140 150 160 170 >>gi|10440375|dbj|BAB15723.1| FLJ00023 protein [Homo sap (192 aa) initn: 1005 init1: 1005 opt: 1005 Z-score: 1179.2 bits: 224.7 E(): 5.6e-57 Smith-Waterman score: 1005; 90.123% identity (97.531% similar) in 162 aa overlap (1-162:27-188) 10 20 30 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELG :::::::::..:.::::.:::.:::::::.:::: gi|104 FLVAARLAARGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELG 10 20 30 40 50 60 40 50 60 70 80 90 mFLJ00 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|104 EGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEH 70 80 90 100 110 120 100 110 120 130 140 150 mFLJ00 IKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTG :.:::::.:::::::: ::.: ::.::::::::::::.::::::::::.:::::::: : gi|104 IRKILGKNEETLREEEEEKKQLSHPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRG 130 140 150 160 170 180 160 mFLJ00 KYKAALKAST :::::::: gi|104 KYKAALKADAQD 190 >>gi|73984967|ref|XP_533729.2| PREDICTED: similar to Mit (287 aa) initn: 1002 init1: 1002 opt: 1002 Z-score: 1173.4 bits: 224.2 E(): 1.2e-56 Smith-Waterman score: 1002; 88.415% identity (96.951% similar) in 164 aa overlap (1-164:122-285) 10 20 30 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTY ::::::::::.::::::.:::.:::::::. gi|739 PGLRRWLLLGFSAAGPAAAAAAAMPMKGRFPIRRTLQYLGQGDVVFKDSVKVMTVNYNTH 100 110 120 130 140 150 40 50 60 70 80 90 mFLJ00 GELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 GELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKE 160 170 180 190 200 210 100 110 120 130 140 150 mFLJ00 IMEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPK :.:::::::::..:::.::: ::.: ::..:::::::::::.::::::::::::.:::: gi|739 IVEHIKKILGKNKETLEEEEQEKKQLSHPAHFGPRKYCLRECICEVEGQVPCPGLLPLPK 220 230 240 250 260 270 160 mFLJ00 EMTGKYKAALKAST :.:::::: : ::: gi|739 ELTGKYKAMLTASTQD 280 >>gi|109098041|ref|XP_001091560.1| PREDICTED: similar to (202 aa) initn: 994 init1: 994 opt: 994 Z-score: 1166.1 bits: 222.4 E(): 3e-56 Smith-Waterman score: 994; 88.344% identity (96.933% similar) in 163 aa overlap (1-163:37-199) 10 20 30 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTY :::::::::..:.::::::::.:::::::. gi|109 AAPESFSSLFGARSGVGPATVAAMPMKGRFPIRRTLQYLSQGNVVFKESVKVMTVNYNTH 10 20 30 40 50 60 40 50 60 70 80 90 mFLJ00 GELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKE 70 80 90 100 110 120 100 110 120 130 140 150 mFLJ00 IMEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPK :::::.:::::.:::::::: .:.. ::.::::::::::::.::::::::::..::::: gi|109 IMEHIRKILGKNEETLREEEEKKKELSHPANFGPRKYCLRECICEVEGQVPCPSVVPLPK 130 140 150 160 170 180 160 mFLJ00 EMTGKYKAALKAST :: ::::: :::: gi|109 EMRGKYKAILKASAQD 190 200 >>gi|108935900|sp|P82669.2|RT25_BOVIN RecName: Full=28S (173 aa) initn: 970 init1: 970 opt: 970 Z-score: 1139.1 bits: 217.1 E(): 9.7e-55 Smith-Waterman score: 970; 83.951% identity (98.148% similar) in 162 aa overlap (1-162:8-169) 10 20 30 40 50 mFLJ00 PIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNP :::::::::..::::::.:::.:::::::.::::::::::::::::::::::: gi|108 MPMKGRFPIRRTLQYLSQGDVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNP 10 20 30 40 50 60 60 70 80 90 100 110 mFLJ00 WVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEK :::::.::::::.::::::::::::::::::::::::::::.::::::.:::::.:. :. gi|108 WVQIMLFKNMTPTPFLRFYLDSGEQVLVDVETKSNKEIMEHVKKILGKNEETLRRERQER 70 80 90 100 110 120 120 130 140 150 160 mFLJ00 QQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST .: ::..:::::::::::.::::::::::..::::.:.:::..:::.: gi|108 EQLSHPAHFGPRKYCLRECICEVEGQVPCPAVVPLPRELTGKFQAALRAGAQD 130 140 150 160 170 164 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 13:13:20 2009 done: Thu Mar 12 13:17:36 2009 Total Scan time: 616.650 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]