FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0356.ptfa, 887 aa
 vs ./tmplib.26680 library

1768130 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.9291+/-0.00704; mu= -0.9315+/- 0.465
 mean_var=297.5553+/-73.227, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0744

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0226  ( 1003 res)   mbg06042                  (1003)  489   67 1.8e-11


>>mKIAA0226  ( 1003 res)   mbg06042                       (1003 aa)
 initn: 403 init1: 217 opt: 489  Z-score: 298.2  bits: 66.5 E(): 1.8e-11
Smith-Waterman score: 489;  32.911% identity (34.061% ungapped) in 237 aa overlap (650-882:739-971)

     620       630       640       650        660       670        
mKIAA0 LGGSLDEKCQEVLKFATRENGFLLQYLVAIPTEK-GLDSQGCFCAGCSRQIGFSFV-RPK
                                     ::.: .. .:.  ::::. .   ... : .
mKIAA0 ADIYKLRIRVRGNLEWAPPRPQIIFNVHPAPTRKIAVAKQNYRCAGCGIRTDPDYIKRLR
      710       720       730       740       750       760        

       680       690       700       710       720       730       
mKIAA0 LCAFSGLYYCDFCHQDDASVIPARIIHNWDLTKRPVCRQALKFLAQIRAQPLINLQLVNA
        : . : :.:. ::..   :.:.::...::..:  :   .  .: .:  .::.:.: .:.
mKIAA0 YCEYLGKYFCQCCHENAQMVVPSRILRKWDFSKYYVSNFSKDLLLKIWNDPLFNVQDINS
      770       780       790       800       810       820        

       740       750       760       770       780        790      
mKIAA0 SLYEHVERMHLIGRSREQLKLLGDYLGLCRSGALKELCKRLSHR-NYLLESPHRFSVADL
       .::..:. .. .   : ::  . ...  :: .  :::   ..   ..: :. : .:..::
mKIAA0 ALYRKVKLLNQVRLLRVQLYHMKNMFKTCRLA--KELLDSFDVVPGHLTEDLHLYSLSDL
      830       840       850       860         870       880      

        800       810       820       830        840       850     
mKIAA0 QQIAEGVYEGFLKALIEFASQHVYHCDLCTQRGFICQICHHQ-DIIFPFEFDTTVRCAEC
           .:     :  : . .. :: .: ::  .::::..:... :.:::::.     : ::
mKIAA0 TATKKGELGPRLAELTRAGAAHVERCMLCQAKGFICEFCQNEEDVIFPFELHKCRTCEEC
        890       900       910       920       930       940      

         860       870       880                                  
mKIAA0 RTVFHQSCQAVVRKGCPRCARRRKYQEQNVVS                           
       .. .:..:    :  :::: : .  .:                                
mKIAA0 KACYHKTCFKSGR--CPRCERLQARRELLAKQSLESYLSDYEEEPTEALALEATVLETT
        950         960       970       980       990      1000   




887 residues in 1 query   sequences
1768130 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:18:42 2006 done: Mon Mar 27 10:18:43 2006
 Scan time:  0.940 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]