# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg18603.fasta.nr -Q ../query/mKIAA1439.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1439, 439 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7916158 sequences Expectation_n fit: rho(ln(x))= 5.8307+/-0.000198; mu= 8.8131+/- 0.011 mean_var=105.7772+/-20.821, 0's: 34 Z-trim: 49 B-trim: 3052 in 1/64 Lambda= 0.124703 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|4433294|dbj|BAA20909.1| NFI-B protein [Mus musc ( 452) 2907 533.4 4.2e-149 gi|49903602|gb|AAH75702.1| Nfia protein [Mus muscu ( 492) 2907 533.5 4.4e-149 gi|123122552|emb|CAM26612.1| nuclear factor I\/A [ ( 498) 2907 533.5 4.5e-149 gi|1698530|gb|AAB49928.1| DNA binding protein NFI- ( 508) 2907 533.5 4.5e-149 gi|17225433|gb|AAL37399.1|AF326553_1 NfiA-1 protei ( 509) 2907 533.5 4.5e-149 gi|220523|dbj|BAA14205.1| NFI-B protein [Mus muscu ( 528) 2907 533.5 4.7e-149 gi|148698959|gb|EDL30906.1| nuclear factor I/A, is ( 540) 2907 533.5 4.7e-149 gi|220521|dbj|BAA14204.1| NFI-B protein [Mus muscu ( 501) 2900 532.2 1.1e-148 gi|14194972|sp|Q02780.1|NFIA_MOUSE RecName: Full=N ( 532) 2900 532.2 1.1e-148 gi|18490343|gb|AAH22264.1| Nuclear factor I/A [Hom ( 498) 2898 531.8 1.4e-148 gi|1488643|emb|CAA58996.1| transcription factor NF ( 498) 2898 531.8 1.4e-148 gi|1334215|emb|CAA31565.1| unnamed protein product ( 505) 2898 531.9 1.4e-148 gi|2506926|sp|P09414.2|NFIA_RAT RecName: Full=Nucl ( 509) 2898 531.9 1.4e-148 gi|14194959|sp|Q12857.2|NFIA_HUMAN RecName: Full=N ( 509) 2898 531.9 1.4e-148 gi|148698958|gb|EDL30905.1| nuclear factor I/A, is ( 510) 2895 531.3 2e-148 gi|55732613|emb|CAH93006.1| hypothetical protein [ ( 498) 2892 530.8 2.9e-148 gi|194388996|dbj|BAG61515.1| unnamed protein produ ( 554) 2892 530.8 3.1e-148 gi|109005684|ref|XP_001083899.1| PREDICTED: simila ( 490) 2891 530.6 3.2e-148 gi|109005681|ref|XP_001084362.1| PREDICTED: simila ( 501) 2891 530.6 3.3e-148 gi|73956374|ref|XP_536691.2| PREDICTED: similar to ( 507) 2891 530.6 3.3e-148 gi|149044532|gb|EDL97791.1| rCG53509, isoform CRA_ ( 521) 2891 530.6 3.4e-148 gi|74228188|dbj|BAE23974.1| unnamed protein produc ( 532) 2891 530.6 3.4e-148 gi|6650640|gb|AAF21949.1|AF112455_1 nuclear factor ( 532) 2891 530.6 3.4e-148 gi|55959923|emb|CAI13083.1| nuclear factor I/A [Ho ( 532) 2891 530.6 3.4e-148 gi|224058336|ref|XP_002198559.1| PREDICTED: nuclea ( 509) 2890 530.4 3.8e-148 gi|194387876|dbj|BAG61351.1| unnamed protein produ ( 509) 2890 530.4 3.8e-148 gi|126306019|ref|XP_001381014.1| PREDICTED: simila ( 696) 2887 530.0 6.9e-148 gi|63668|emb|CAA48257.1| nuclear factor I-A4 [Gall ( 498) 2882 529.0 1e-147 gi|63664|emb|CAA48255.1| nuclear factor I-A [Gallu ( 509) 2882 529.0 1e-147 gi|194387784|dbj|BAG61305.1| unnamed protein produ ( 501) 2862 525.4 1.2e-146 gi|194211268|ref|XP_001918154.1| PREDICTED: simila ( 510) 2832 520.0 5.2e-145 gi|109005690|ref|XP_001084128.1| PREDICTED: simila ( 497) 2821 518.0 2e-144 gi|109005693|ref|XP_001084007.1| PREDICTED: simila ( 497) 2793 513.0 6.6e-143 gi|114556860|ref|XP_001157491.1| PREDICTED: hypoth ( 511) 2747 504.7 2.1e-140 gi|114556862|ref|XP_001157438.1| PREDICTED: hypoth ( 511) 2718 499.5 7.8e-139 gi|94733059|emb|CAK05017.1| novel protein similar ( 507) 2704 497.0 4.5e-138 gi|81674457|gb|AAI09483.1| Nuclear factor I/A [Bos ( 462) 2622 482.2 1.1e-133 gi|114556850|ref|XP_001157608.1| PREDICTED: hypoth ( 527) 2356 434.4 3.2e-119 gi|1524155|emb|CAA68955.1| NfiA splice variant [Mu ( 466) 2114 390.8 3.8e-106 gi|55959919|emb|CAI13079.1| nuclear factor I/A [Ho ( 466) 2111 390.2 5.5e-106 gi|116063327|gb|AAI22879.1| Nfia protein [Mus musc ( 455) 2109 389.9 6.9e-106 gi|109005687|ref|XP_001083782.1| PREDICTED: simila ( 458) 2104 389.0 1.3e-105 gi|63670|emb|CAA48258.1| nuclear factor I-A5 [Gall ( 461) 2099 388.1 2.4e-105 gi|109123610|ref|XP_001110618.1| PREDICTED: nuclea ( 507) 2097 387.7 3.3e-105 gi|110760|pir||F36596 nuclear factor I (clone B6) ( 347) 2078 384.2 2.7e-104 gi|220525|dbj|BAA14206.1| NFI-B protein [Mus muscu ( 378) 2078 384.2 2.9e-104 gi|128134|sp|P17923.1|NFIA_CHICK RecName: Full=Nuc ( 522) 2077 384.2 4.1e-104 gi|63672|emb|CAA48259.1| nuclear factor I-A6 [Gall ( 386) 2054 379.9 5.8e-103 gi|32130433|sp|P70257.2|NFIX_MOUSE RecName: Full=N ( 488) 2043 378.0 2.7e-102 gi|119604744|gb|EAW84338.1| nuclear factor I/X (CC ( 498) 2040 377.5 4e-102 >>gi|4433294|dbj|BAA20909.1| NFI-B protein [Mus musculus (452 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 2833.3 bits: 533.4 E(): 4.2e-149 Smith-Waterman score: 2907; 100.000% identity (100.000% similar) in 427 aa overlap (1-427:9-435) 10 20 30 40 50 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|443 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|443 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|443 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|443 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|443 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|443 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA1 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|443 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 370 380 390 400 410 420 420 430 mKIAA1 GSSQGKVHNPFLPTPTFLSRRQSIHIQ ::::::::::::::: gi|443 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLP 430 440 450 >>gi|49903602|gb|AAH75702.1| Nfia protein [Mus musculus] (492 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 2832.8 bits: 533.5 E(): 4.4e-149 Smith-Waterman score: 2907; 100.000% identity (100.000% similar) in 427 aa overlap (1-427:9-435) 10 20 30 40 50 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|499 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|499 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|499 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|499 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|499 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|499 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA1 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|499 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 370 380 390 400 410 420 420 430 mKIAA1 GSSQGKVHNPFLPTPTFLSRRQSIHIQ ::::::::::::::: gi|499 GSSQGKVHNPFLPTPMLPPPPPPPMARHQASNHTSPTYSTPSTSPANRFVSVGPRDPSFV 430 440 450 460 470 480 >>gi|123122552|emb|CAM26612.1| nuclear factor I\/A [Mus (498 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 2832.7 bits: 533.5 E(): 4.5e-149 Smith-Waterman score: 2907; 100.000% identity (100.000% similar) in 427 aa overlap (1-427:9-435) 10 20 30 40 50 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA1 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 370 380 390 400 410 420 420 430 mKIAA1 GSSQGKVHNPFLPTPTFLSRRQSIHIQ ::::::::::::::: gi|123 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPILVPGIK 430 440 450 460 470 480 >>gi|1698530|gb|AAB49928.1| DNA binding protein NFI-A (508 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 2832.6 bits: 533.5 E(): 4.5e-149 Smith-Waterman score: 2907; 100.000% identity (100.000% similar) in 427 aa overlap (1-427:8-434) 10 20 30 40 50 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL ::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 YSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELL 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 SEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLR 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 QADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAY 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 FVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 FVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTG 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 PNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 PNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSP 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 GSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 GSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASP 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA1 HATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|169 HATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNG 370 380 390 400 410 420 420 430 mKIAA1 SSQGKVHNPFLPTPTFLSRRQSIHIQ :::::::::::::: gi|169 SSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTS 430 440 450 460 470 480 >>gi|17225433|gb|AAL37399.1|AF326553_1 NfiA-1 protein [M (509 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 2832.6 bits: 533.5 E(): 4.5e-149 Smith-Waterman score: 2907; 100.000% identity (100.000% similar) in 427 aa overlap (1-427:9-435) 10 20 30 40 50 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA1 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 370 380 390 400 410 420 420 430 mKIAA1 GSSQGKVHNPFLPTPTFLSRRQSIHIQ ::::::::::::::: gi|172 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPST 430 440 450 460 470 480 >>gi|220523|dbj|BAA14205.1| NFI-B protein [Mus musculus] (528 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 2832.4 bits: 533.5 E(): 4.7e-149 Smith-Waterman score: 2907; 100.000% identity (100.000% similar) in 427 aa overlap (1-427:28-454) 10 20 30 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYF ::::::::::::::::::::::::::::::::: gi|220 VWFQQPLPFADLLPGNSIHTASPTCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYF 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 KKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 KKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPP 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 CCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 CCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGL 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 CVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 CVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSG 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA1 VFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 VFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSV 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA1 EDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 EDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSS 310 320 330 340 350 360 340 350 360 370 380 390 mKIAA1 LGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 LGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQ 370 380 390 400 410 420 400 410 420 430 mKIAA1 LVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPTFLSRRQSIHIQ :::::::::::::::::::::::::::::::::: gi|220 LVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTT 430 440 450 460 470 480 gi|220 STEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG 490 500 510 520 >>gi|148698959|gb|EDL30906.1| nuclear factor I/A, isofor (540 aa) initn: 2907 init1: 2907 opt: 2907 Z-score: 2832.3 bits: 533.5 E(): 4.7e-149 Smith-Waterman score: 2907; 100.000% identity (100.000% similar) in 427 aa overlap (1-427:40-466) 10 20 30 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKR :::::::::::::::::::::::::::::: gi|148 THTHAHLQPAHRRARTPRRPAVMYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKR 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 KYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KYFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGK 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 KPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KPPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSN 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 PGLCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PGLCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFV 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA1 TSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TSGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRL 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA1 KSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KSVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQ 310 320 330 340 350 360 340 350 360 370 380 390 mKIAA1 TSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TSSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKE 370 380 390 400 410 420 400 410 420 430 mKIAA1 FVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPTFLSRRQSIHIQ ::::::::::::::::::::::::::::::::::::: gi|148 FVQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKP 430 440 450 460 470 480 gi|148 PTTSTEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG 490 500 510 520 530 540 >>gi|220521|dbj|BAA14204.1| NFI-B protein [Mus musculus] (501 aa) initn: 2900 init1: 2900 opt: 2900 Z-score: 2825.9 bits: 532.2 E(): 1.1e-148 Smith-Waterman score: 2900; 100.000% identity (100.000% similar) in 426 aa overlap (2-427:2-427) 10 20 30 40 50 60 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 MDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDELLSEKPEVK 10 20 30 40 50 60 70 80 90 100 110 120 mKIAA1 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 QKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCLRQADKVWR 70 80 90 100 110 120 130 140 150 160 170 180 mKIAA1 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 LDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLAYFVHAADS 130 140 150 160 170 180 190 200 210 220 230 240 mKIAA1 SQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 SQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSD 190 200 210 220 230 240 250 260 270 280 290 300 mKIAA1 LESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 LESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRSPGSGSQSS 250 260 270 280 290 300 310 320 330 340 350 360 mKIAA1 GWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 GWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRASPHATPSTL 310 320 330 340 350 360 370 380 390 400 410 420 mKIAA1 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 HFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPNGSSQGKVH 370 380 390 400 410 420 430 mKIAA1 NPFLPTPTFLSRRQSIHIQ ::::::: gi|220 NPFLPTPMLPPPPPPPMARPVPLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVS 430 440 450 460 470 480 >>gi|14194972|sp|Q02780.1|NFIA_MOUSE RecName: Full=Nucle (532 aa) initn: 2900 init1: 2900 opt: 2900 Z-score: 2825.5 bits: 532.2 E(): 1.1e-148 Smith-Waterman score: 2900; 100.000% identity (100.000% similar) in 426 aa overlap (2-427:33-458) 10 20 30 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRK :::::::::::::::::::::::::::::: gi|141 LADSVMAGKASDGSIKWQLCYDISARTWWMDEFHPFIEALLPHVRAFAYTWFNLQARKRK 10 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 YFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 YFKKHEKRMSKEEERAVKDELLSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKK 70 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 PPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 PPCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNP 130 140 150 160 170 180 160 170 180 190 200 210 mKIAA1 GLCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 GLCVQPHHIGVSVKELDLYLAYFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVT 190 200 210 220 230 240 220 230 240 250 260 270 mKIAA1 SGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 SGVFSVTELVRVSQTPIAAGTGPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLK 250 260 270 280 290 300 280 290 300 310 320 330 mKIAA1 SVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 SVEDEMDSPGEEPFYTGQGRSPGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQT 310 320 330 340 350 360 340 350 360 370 380 390 mKIAA1 SSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|141 SSLGTAFTQHHRPVITGPRASPHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEF 370 380 390 400 410 420 400 410 420 430 mKIAA1 VQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPTFLSRRQSIHIQ :::::::::::::::::::::::::::::::::::: gi|141 VQLVCPDAGQQAGQVGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPMPDTKPP 430 440 450 460 470 480 gi|141 TTSTEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNIPQQTQSWYLG 490 500 510 520 530 >>gi|18490343|gb|AAH22264.1| Nuclear factor I/A [Homo sa (498 aa) initn: 2898 init1: 2898 opt: 2898 Z-score: 2824.0 bits: 531.8 E(): 1.4e-148 Smith-Waterman score: 2898; 99.297% identity (100.000% similar) in 427 aa overlap (1-427:9-435) 10 20 30 40 50 mKIAA1 QDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 MYSPLCLTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKEEERAVKDEL 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 LSEKPEVKQKWASRLLAKLRKDIRPEYREDFVLTVTGKKPPCCVLSNPDQKGKMRRIDCL 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 RQADKVWRLDLVMVILFKGIPLESTDGERLVKSPQCSNPGLCVQPHHIGVSVKELDLYLA 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 YFVHAADSSQSESPSQPSEADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|184 YFVHAADSSQSESPSQPSDADIKDQPENGHLGFQDSFVTSGVFSVTELVRVSQTPIAAGT 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 GPNFSLSDLESSSYYSMSPGAMRRSLPSTSSTSSTKRLKSVEDEMDSPGEEPFYTGQGRS 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 PGSGSQSSGWHEVEPGLPSPSTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS ::::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::: gi|184 PGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPSQTSSLGTAFTQHHRPVITGPRAS 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA1 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 PHATPSTLHFPTSPIIQQPGPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQVGFLNPN 370 380 390 400 410 420 420 430 mKIAA1 GSSQGKVHNPFLPTPTFLSRRQSIHIQ ::::::::::::::: gi|184 GSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSPILVPGIK 430 440 450 460 470 480 439 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 07:20:18 2009 done: Sat Mar 14 07:26:56 2009 Total Scan time: 897.930 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]