FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1725.ptfa, 1053 aa
 vs ./tmplib.26680 library

1767964 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.2701+/-0.00546; mu= 12.4618+/- 0.364
 mean_var=153.9673+/-35.657, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1034

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1298  ( 1035 res)   mpg00361                  (1035)  488   85 4.9e-17


>>mKIAA1298  ( 1035 res)   mpg00361                       (1035 aa)
 initn: 705 init1: 488 opt: 488  Z-score: 398.2  bits: 85.3 E(): 4.9e-17
Smith-Waterman score: 488;  71.277% identity (71.277% ungapped) in 94 aa overlap (1-94:365-458)

                                             10        20        30
mKIAA1                               WNDTYKFISKAKKHGSKCLVHCKMGVSRSA
                                     ::..:.::.:::.. :::::::::::::::
mKIAA1 TREIDNFFPGLFAYHNIRVYDEETTDLLAHWNEAYHFINKAKRNHSKCLVHCKMGVSRSA
          340       350       360       370       380       390    

               40        50        60        70        80        90
mKIAA1 STVIAYAMKEYGWNLDRAYDYVKERRTVTKPNPSFMRQLEEYQGILLASKQRHNKLWRSH
       ::::::::::.:: :..::.:::..:..:.:: .::::: ::.::: :::::::::::..
mKIAA1 STVIAYAMKEFGWPLEKAYNYVKQKRSITRPNAGFMRQLSEYEGILDASKQRHNKLWRQQ
          400       410       420       430       440       450    

              100       110       120       130       140       150
mKIAA1 SDSDLSDHHEPICKPGLELNKKEMTTSADQIAEVKTVENLAAMPTVFMEHVVPQDANQKG
         .:                                                        
mKIAA1 PTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLPRSLAPGGPALPCCFRRLSDPLLL
          460       470       480       490       500       510    




1053 residues in 1 query   sequences
1767964 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:51:42 2006 done: Mon Mar 27 10:51:43 2006
 Scan time:  1.060 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]