FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1940.ptfa, 865 aa
 vs ./tmplib.26680 library

1768152 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 9.3167+/-0.00791; mu= -0.6703+/- 0.528
 mean_var=334.9193+/-79.819, 0's: 0 Z-trim: 4  B-trim: 110 in 1/35
 Lambda= 0.0701

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0844  ( 432 res)   mbh01248                   ( 432)  364   50 5.1e-07


>>mKIAA0844  ( 432 res)   mbh01248                        (432 aa)
 initn: 514 init1: 308 opt: 364  Z-score: 218.4  bits: 50.5 E(): 5.1e-07
Smith-Waterman score: 461;  29.067% identity (35.544% ungapped) in 461 aa overlap (1-459:52-430)

                                             10        20        30
mKIAA1                               RCPRCGEHKRFRSLSSLRAHLEYSHTYETL
                                     ::::::.: :::::::::::::.::.::  
mKIAA0 TFRVMQQTTFEESRYHWQDSLENVAVCLPFRCPRCGDHTRFRSLSSLRAHLEFSHSYEER
              30        40        50        60        70        80 

               40        50        60        70        80        90
mKIAA1 YILSKTNSICDGAAAAAAAAAAASGFPLAPEPAALLAVPGARREVFESTSFQGKEQATGP
        .:.:    :             : .:   .   : .    .    ..  ..:. ..:  
mKIAA0 TLLTK----C-------------SLLPSLKDTELLRSSELPK----QGKVLRGHAKVTKQ
                               90       100           110       120

              100       110       120       130       140       150
mKIAA1 SPAGPHLLHHHHHHAPLAHFPADLVPASLPCEELAEPGLVPAARYALREIEIPLGELFAR
       .:.  .:    : :.       :    . : : .::  .  .  :.  .:.         
mKIAA0 KPSYVNLYSISHGHSK------D----TKPFEMVAERPVSYVQTYTAVDIR---------
              130                 140       150       160          

              160       170       180       190       200       210
mKIAA1 KSVASSACSTPPPGPGPGPCSGPSSASPASPSPADVAYEEGLARLKIRALEKLEVDRRLE
          :.:           .::..:                 ::     .:  . .: ....
mKIAA0 ---ADSL---------DAPCASP-----------------GLPTQDTKAAFEAHVREKFN
                         170                        180       190  

              220       230       240       250       260       270
mKIAA1 RLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDVSV
       :. : :.. :  .. .:  :: .:.:::  .:   :.: ..:.:...:   :..::::.:
mKIAA0 RMVEAVDRTIEKRIDKLTKELAQKTAELLEVRAAFAQLTQKKQEVQRRERALNKQVDVAV
            200       210       220       230       240       250  

              280       290       300       310       320       330
mKIAA1 ELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAE
       :..: ::: :...:.:: ::..::: ...::. .: .:...: :::.:::.::.:.. ::
mKIAA0 EMIAVLKQRLTESEEELLRKEEEVVTFNHFLEAAAEKEVQGKARLQDFIENLLQRVELAE
            260       270       280       290       300       310  

              340       350       360       370         380        
mKIAA1 RQLQVISSSCGSTPSASLGRGGGGSASGPGVRGPGRMREHHAGSAV--PSTYAVSRHGSS
       .::.  .:. .:  : . ..     .. :. : :  . . :  :.   :   :   : . 
mKIAA0 KQLEYYQSQQASGFSCDTSEH---LTDIPSNRKPRCLSRGHQHSVCNHPELRA-HFHLK-
            320       330          340       350       360         

      390       400       410       420       430       440        
mKIAA1 PSTGASSRVPAASQSSGCYDSDSLELPRPEEGPSEDSGPGGLGSRAQATNGGSERSQAPR
          : :    : .. .:   . ...  .: :.: :   :.  : .   .  :. :   :.
mKIAA0 ---GRSYLKKAKDERAGMQPAKAIH--EPAESPREFFRPAKKGEHLGLSRKGNFR---PK
          370       380         390       400       410            

      450       460       470       480       490       500        
mKIAA1 SSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDVPRPGPAVAGPLNSC
        .  .  :: :                                                 
mKIAA0 MAKKKPTAIVNII                                               
     420       430                                                 




865 residues in 1 query   sequences
1768152 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:56:18 2006 done: Mon Mar 27 10:56:19 2006
 Scan time:  1.000 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]