FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1779.ptfa, 525 aa vs ./tmplib.26680 library 1768492 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.0269+/-0.00573; mu= 6.7357+/- 0.382 mean_var=195.0237+/-45.489, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0918 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0347 ( 1267 res) mbg06119 (1267) 397 65 3.3e-11 >>mKIAA0347 ( 1267 res) mbg06119 (1267 aa) initn: 282 init1: 122 opt: 397 Z-score: 293.5 bits: 65.2 E(): 3.3e-11 Smith-Waterman score: 460; 32.511% identity (37.662% ungapped) in 446 aa overlap (106-512:587-1010) 80 90 100 110 120 130 mKIAA1 QGGDEQKDFSSSQTLKNKSTTDTGSGGNLQQEQPSSSYQQMNCIDSVIRYLTSYSLPA-L ..:: ::::..:.::::::: : : : : mKIAA0 PAQVKAVTTIERDSSGASLPKASFPEELAYKNQPPCSYQQISCLDSVIRYLESCSEAATL 560 570 580 590 600 610 140 150 160 170 180 190 mKIAA1 KRKCISCTNTSSSSEEAKPIPEVDSSQRDTEQLLDIRKQETTGPSTDIEGGAARTLSTAA :::: .: : ..: : . :.. : ...:. . .. :: : mKIAA0 KRKCEFPANIPS--RKATVSPGLHSGEA-------ARPSKVTSHTEVSAHLSSLTLPGKA 620 630 640 650 660 200 210 220 230 240 mKIAA1 LSVASGISQCSCSSTSGHA----PPLQSESVA-VACKPWALRTKASHLA--AGGFKHVGL ::.: :::: ::: :. : . :.: .: : .: :. :. : ....:: mKIAA0 ESVVSLTSQCSYSSTIVHVGDKKPQPELETVEDMASGPESLDGAAGGLSQEKGPLQKLGL 670 680 690 700 710 720 250 260 270 280 290 300 mKIAA1 TAAVLSAHTQKEEQNYVDRFRE--KILTSPYGC--YLQQESRNRAQYSCVQAGSTAKHS- : ::.::::.:::....:::: .. . : :::..:: .:. .. : . : mKIAA0 TKEVLAAHTQREEQGFLQRFREVSRLSALQAHCQNYLQERSRAQASDRGLRNTSGLESSW 730 740 750 760 770 780 310 320 330 340 350 mKIAA1 RCAGSERQ-KHKRKKLPAPVDTSSPGAHLC--PHVTGLLPDEQHWGPSASPSPLGAGLAF . .:..:. : :: : .... :. . : . :: . :.:: . . . : mKIAA0 KKTGKNRKLKSKRVKTRDSSESTGSGGPVSHRPPLMGL--NATAWSPSDTSQSSCPSAPF 790 800 810 820 830 840 360 370 380 390 400 410 mKIAA1 PSALVVPSQTPYLLPSFPLQDMASQ-GVGVSAAWGAAAGC--P--PLSAGPQ-AVAAFP- :.: ::. : :: : ..: :. :. .. .: : :... :. :: .: mKIAA0 PTA--VPA---YPLPVFQAPGIVSTPGTVVAPPAATHTGFTMPVVPMGTQPEFAVQPLPF 850 860 870 880 890 900 420 430 440 450 460 mKIAA1 SAYVDTLMTIFLHNAPLFPLWP----------PSFSPYPSLGAAGSSELAPLVPAMAPNP .: . .:...: . :. : : : : .:.: .::..: ..: : mKIAA0 AAPLAPVMAFMLPSYPFPPATPNLPQAFLPSQPHFPAHPTL----ASEITP--ASQAEFP 910 920 930 940 950 470 480 490 500 510 mKIAA1 EPTTSGHSQRRVEENWEAHSEEL-----PFISSRSSSPLQLNLLQ-EEMPAPSESADAVR :.. .. . : . : :...::.:::::::::: :: : : .: mKIAA0 SRTSTLRQPCACPVTPPAGTVALGRASPPLFQSRGSSPLQLNLLQLEEAPEGSTGAAGTL 960 970 980 990 1000 1010 520 mKIAA1 RGAGPDAKH mKIAA0 GTTGTAASGLDCTSGTSRDRQPKAPPTCNEPSDTQNSDAISTSSDLLNLLLGEDLCSATG 1020 1030 1040 1050 1060 1070 525 residues in 1 query sequences 1768492 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:53:00 2006 done: Mon Mar 27 10:53:01 2006 Scan time: 0.750 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]