FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1650.ptfa, 856 aa vs ./tmplib.26680 library 1768161 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 13.2797+/-0.00914; mu= -23.2631+/- 0.603 mean_var=484.6221+/-118.157, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.0583 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1022 ( 1128 res) mbp08192 (1128) 502 57 1.4e-08 >>mKIAA1022 ( 1128 res) mbp08192 (1128 aa) initn: 1047 init1: 373 opt: 502 Z-score: 246.2 bits: 57.0 E(): 1.4e-08 Smith-Waterman score: 1380; 36.060% identity (43.004% ungapped) in 929 aa overlap (29-853:243-1125) 10 20 30 40 50 mKIAA1 PLGPLPYPERQKRARSMIILQDSAPEVGDVPRPAPAATPPERPKRRPRPSGPDSPYAN :: .:: :. : : . :..::.. mKIAA1 ATRSDTVATMMREKGMFYRRELDRFSLDSEDVYSRSPA---PQAAFRTKRGQMPENPYSE 220 230 240 250 260 60 70 80 90 100 110 mKIAA1 LGAF-SASLFAPSKPQRRKSPLVKQLQVEDAQERA------ALAVGSPGPVGGSFAREPS .: . : ....:.:: :::. :::: .:::. :.. .. : :. ... . . : mKIAA1 VGKIASKAVYVPAKPARRKGVLVKQSNVEDSPEKTCSIPIPTIIVKEPSTSSSGKSSQGS 270 280 290 300 310 320 120 130 140 150 160 mKIAA1 PTHRGPR---PGSLDYSSGEGLGLTFGGPSPGPVK--ERRLEERRRSTVFLS--VGAIE- . :. ::.: ... .. :.. : :. :.::: :: : .::: .: . mKIAA1 SMEIDPQATEPGQLRPDDSLTVSSPFAAAIAGAVRDREKRLEARRNSPAFLSTDLGDEDV 330 340 350 360 370 380 170 180 190 200 mKIAA1 GSPPSADLPSLQPSRSIDERLLGTGATTGRDLLLPSPVSALKPL---------------V : : : : .: :. .: .: : . :: :.: .: . : . mKIAA1 GLGPPA--PRMQASKFPEEGGFGDEDETEQPLL-PTPGAAPRELENHFLGGGEAGAQGEA 390 400 410 420 430 440 210 220 230 240 mKIAA1 GGP-------------------SLGPSGS-TFIHPLTGKPLDPSSPLALALAARERALA- ::: : .:.: ...:::::. :::::::::::.::.::. mKIAA1 GGPLSSTSKAKGPESGPAAPLKSSSPAGPENYVHPLTGRLLDPSSPLALALSARDRAMQE 450 460 470 480 490 500 250 260 270 280 290 300 mKIAA1 SQTPSRSPTPVHSPDADRPGPLFVDVQTRDSERGPLASPAFSPRSPAWIPVPARREAEKP :: .. ..: :: ::..:.. : : . .: : . : ::. . mKIAA1 SQQGHKG----EAPKADLNKPLYIDTKMR-----PSVESGFPPVTRQNTRGPLRRQETEN 510 520 530 540 550 310 320 330 340 350 360 mKIAA1 PRE----ERKSPEDKKSMILSVLDTSLQRPAGLIVVHATSNGQEPSRLGAEEERPG---T : . . .:::.:.....::. :. :::..::... . : ::.: mKIAA1 KYETDLGKDRRADDKKNMLINIVDTAQQKSAGLLMVHTVDVPMAGPPLEEEEDREDGDTK 560 570 580 590 600 610 370 380 390 400 410 mKIAA1 PELAPA--PMQAAAVAEPMPSPRAQPPGSIPADPGPGQGSSEEEPELVFAVNLPPAQLSS :. .:. : . . . : :. :. . :: :: : : . :: :.: mKIAA1 PDHSPSTVPEGVPKTEGALQISAAPEPAVAPGRTIVAAGSVEEAVILPFRI--PPPPLAS 620 630 640 650 660 670 420 430 440 450 460 mKIAA1 SDEETREELARIGLVPPPEEFANGILL------TTPP------------PGPGPLPTTVP : . :.. .::: ::::.. . ..: : : : .. : mKIAA1 VDLD--EDFLFTEPLPPPLEFANSFDIPDDRAASVPALADLVKQKKNDTPQPPTLNSSQP 680 690 700 710 720 730 470 480 490 500 mKIAA1 S-------PASGK---PSSELPPAPES---AADSGVEEADTRSSSDPHLETTSTISTVSS . ::. . ::: ::: ::: ..:::.::.:.::::: ::::::::::::: mKIAA1 ANSTDSKKPAGISNCLPSSFLPP-PESFDAVTDSGIEEVDSRSSSDHHLETTSTISTVSS 740 750 760 770 780 790 510 520 530 540 550 560 mKIAA1 MSTLSSESGELTDTHTSFADGHTFLLEKPPVPPKPKLKSPLGKGPVTFRDPLLKQSSDSE .::::::.:: :: : .:::..:...:::::::::.: . :. . ..: : ....:. mKIAA1 ISTLSSEGGESMDTCTVYADGQAFVVDKPPVPPKPKMKPIVHKSNALYQDTLPEEDTDGF 800 810 820 830 840 850 570 580 590 600 610 620 mKIAA1 LMAQQHHAASTGLASAAGPARPRYLFQRRSKLWGD-P-VESRGLPGPEDDKPTVISELSS .. : :.: : :. . : :::::: : :.: : :: : .:::::.: mKIAA1 VIPPPAPPPPPGSAQA-GVAK--VIQPRTSKLWGDVPEVKSPILSGP---KANVISELNS 860 870 880 890 900 630 640 650 660 670 680 mKIAA1 RLQQLNKDTRSL----GEE-PVGGLGSLLDPAKKSPIAAARLFSSLGELSTISAQRSPGG :::.:. .:. : : :::. .. : : .:: . . . .. . :.... . . mKIAA1 ILQQMNRG-KSVKPGEGLELPVGAKSANLAP--RSPEVMSTVSGTRSTTVTFTVRPGTSQ 910 920 930 940 950 960 690 700 710 720 730 mKIAA1 P----GGGASYSVRPSGRYPVARRAPSPV-KPASLERVEGLGAGVGGAGRPFGLTP-PTI : . .: : :: : ::::::: .:. : . : : . .. . .: ::. mKIAA1 PITLQSRPPDYESRTSG--P--RRAPSPVVSPTELSK-EILPTPPPPSAT--AASPSPTL 970 980 990 1000 1010 740 750 760 770 780 790 mKIAA1 LKSSSLSIPHEPKEVRFVVRSVSARSRSPSPSPLPSPSPGSGPSAGPRRPFQQKPLQLWS :. .:.: . . . ..:::::::: : .: . .:: ::..::. mKIAA1 --SDVFSLPSQSPAGDLFGLNPAGRSRSPSPSILQQPISN--------KPFTTKPVHLWT 1020 1030 1040 1050 1060 800 810 820 830 840 850 mKIAA1 KFDVGDWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRMNIERALRQLD : ::.:::::..::::.. : :.::.:.::: : :::...::::::::::::::::.:: mKIAA1 KPDVADWLESLNLGEHKETFMDNEIDGSHLPNLQKEDLIDLGVTRVGHRMNIERALKQLL 1070 1080 1090 1100 1110 1120 mKIAA1 GS mKIAA1 DR 856 residues in 1 query sequences 1768161 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:50:23 2006 done: Mon Mar 27 10:50:24 2006 Scan time: 1.010 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]