FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1162.ptfa, 354 aa
 vs ./tmplib.26680 library

1768663 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.9582+/- 0.006; mu= 2.0774+/- 0.399
 mean_var=183.2641+/-44.267, 0's: 0 Z-trim: 9  B-trim: 0 in 0/36
 Lambda= 0.0947

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1830  ( 477 res)   mpm12107                   ( 477)  170   35  0.0087


>>mKIAA1830  ( 477 res)   mpm12107                        (477 aa)
 initn: 143 init1:  83 opt: 170  Z-score: 142.3  bits: 35.3 E(): 0.0087
Smith-Waterman score: 170;  22.785% identity (24.161% ungapped) in 158 aa overlap (12-161:5-161)

               10        20        30              40        50    
mKIAA1 EAQPLLPALRELSYLTGATMTGGFCVPVLLA------AWLAAAAAEGLEQAALPAEESRV
                  : ::.  .. .:: .:  .:      .: :     ..    : . .. :
mKIAA1        GGGSLHYLSLLALIAGF-TPRSMANAVGRRSWAALRLCAAVILLDLAVCKGFV
                      10         20        30        40        50  

           60        70        80        90         100       110  
mKIAA1 QPMTASNWTLVMEGEWMLKFYAPWCPSCQQTDSEWETFAKNGETL--QISVGKVDVIQEP
       . .. :      .  :.. ::::::  :.. .  :.  . . ...   ..:::.:. .  
mKIAA1 EDLNESFKDNRKDDIWLVDFYAPWCGHCKKLEPIWNEVGLEMKSIGSPVKVGKMDATSYS
             60        70        80        90       100       110  

            120       130       140       150       160       170  
mKIAA1 GLSGRFFVTTLPAFFHAKDGIFRRYRGPGIYEDLQNYILEKKWQSVEPLTGWKSPASLTM
       .....: :   :..   :  .   ::::   .:. ..  . .   ..::           
mKIAA1 SIASEFGVRGYPTIKLLKGDLAYNYRGPRTKDDIIEFAHRVSGALIRPLPSQQMFDHVRK
            120       130       140       150       160       170  

            180       190       200       210       220       230  
mKIAA1 SGMAGLFSISGKIWHLHNYFTVTLGIPAWCSYVFFVIATLVFGLFMGLILVVISECFCVP
                                                                   
mKIAA1 RHRVFFVYIGGESPLKEKYIDAASELIVYTYFFSASEDVVPEYVTLKEMPAVLVFKDDTY
            180       190       200       210       220       230  




354 residues in 1 query   sequences
1768663 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:37:31 2006 done: Mon Mar 27 10:37:31 2006
 Scan time:  0.580 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]