FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0250.ptfa, 1157 aa vs ./tmplib.26680 library 1767860 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.9006+/-0.00907; mu= -14.6503+/- 0.600 mean_var=499.0631+/-121.693, 0's: 0 Z-trim: 7 B-trim: 0 in 0/36 Lambda= 0.0574 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0732 ( 972 res) mfj00235 ( 972) 318 42 0.00068 mKIAA1089 ( 1064 res) mpm09089 (1064) 279 39 0.0068 >>mKIAA0732 ( 972 res) mfj00235 (972 aa) initn: 423 init1: 178 opt: 318 Z-score: 162.3 bits: 41.7 E(): 0.00068 Smith-Waterman score: 334; 23.014% identity (28.753% ungapped) in 491 aa overlap (5-420:128-595) 10 20 30 mKIAA0 SLWENVSFKSQMRTENLKSEEHLKSSNIRQAEVL :.. . : . ....:. ::. . . . mKIAA0 PGYPAPSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSRDRI 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA0 KAEMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQ ..: : .. : : .::.. .. :.:.. ...:.: ::..:: . : .. mKIAA0 STE------GMEKMAQLRTELLQLYERCILLDIEFSDSQNVDQILWKNAFYQVIEKFRQL 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA0 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH :. . : ... : .:. .: :. .:::.: .... : . . . ..: mKIAA0 LKDPNSENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTV 220 230 240 250 260 270 160 170 180 190 200 mKIAA0 SSTIVKPQSSSCSYICQHCLVHLGDIARYRNQTS------QAESYYRHAAQLVPSNGQPY . .... : : .::: :::.:::.:.. .:.:.: .: ...:.::.:: mKIAA0 KYALISAQRS---MICQ------GDISRYREQANDTANYGKARSWYLKAQHIAPKNGRPY 280 290 300 310 320 210 220 230 240 250 mKIAA0 NQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ------KALSKALESR-----D ::::.:: .: ...:: ::.:.. :. .:. .:. : .. .:.. : mKIAA0 NQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFD 330 340 350 360 370 380 260 mKIAA0 ELKTKW-------------------------------------------GV-----SD-- :: :. :: mKIAA0 MSPDKWRKGKKSTFRHVGDDTTRLEIWIHPSHSRSAQGTESGKDSEQENGLGSLSPSDLN 390 400 410 420 430 440 270 280 290 300 310 320 mKIAA0 --FIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQK--AFNSQQLVHVTVINLFQ :: .:.. ::... ..: . . ::. ..:. :: .. ..: ..... .::.: mKIAA0 KRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQHSPSPIGSTRMLQLMTINMFA 450 460 470 480 490 500 330 340 350 360 370 380 mKIAA0 LHH--LRD-FSNETEQHSYSQDEQLCWTQLLALFMSFLGILCKCPLQNDSQESNNAYPLP .:. :.: ::.: .. : .: ::.: :.: : : :..... . .. : mKIAA0 VHNSQLKDCFSEECRSVIQEQAASLG----LAMF-SLLVQRCTCLLKDSAKAQLSS---P 510 520 530 540 550 390 400 410 420 430 mKIAA0 AVKVSMDWLRLRPRVFQEAVVDERQYIWP-WLISLLNSFHPREDDLSNTNATPLPEEFEL . ..: ... : . . .: :... ....: mKIAA0 EDQEDQDDIKVSSFVPDLKELLPSVKVWSDWMLGYPDTWNPPPTSLDLPLQVAVDVWSTL 560 570 580 590 600 610 440 450 460 470 480 490 mKIAA0 QGFLALRPSFRNLDFSKGHQGITGDKEGQQRRIRQQRLISIGKWIADNQPRLIQCENEVG mKIAA0 ADFCNILTAVNQSEVPLYKDPDDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVI 620 630 640 650 660 670 >>mKIAA1089 ( 1064 res) mpm09089 (1064 aa) initn: 315 init1: 146 opt: 279 Z-score: 144.3 bits: 38.5 E(): 0.0068 Smith-Waterman score: 279; 27.556% identity (29.665% ungapped) in 225 aa overlap (45-260:97-314) 20 30 40 50 60 70 mKIAA0 ENLKSEEHLKSSNIRQAEVLKAEMTDSKLGPAEVWTSRQALQDLYQK-MLVTDLEYALDK : .: . :. :..: : :.. ..:. . mKIAA1 TKRLYRAVVEAVHRLDLILCNKAAYQEVFKPENV-SLRNKLRELCVKLMFLHPVDYG--R 70 80 90 100 110 120 80 90 100 110 120 130 mKIAA0 KVEQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFN :.:. :: ... . : .. . :. .:: .. : :. ::: .:: . . .. mKIAA1 KAEELLWRKVYYEVIQLIKTNKKH--IHSRSTLECAYRTHLVAGIGFYQHLLLYIQSHYQ 130 140 150 160 170 180 140 150 160 170 180 mKIAA0 VDLPCRVKSSQLG--IISNKQTHSSTIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQ-- ..: : . ... ... :. :.. . . .. :..:::.:::..::.:. . mKIAA1 LELQCCIDWTHVTDPLMGFKKPVSAS--GKEMDWAQMACHRCLVYLGDLSRYQNELAGVD 190 200 210 220 230 190 200 210 220 230 240 mKIAA0 ----AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL :: .: .: ...:. :.:.:::. ::.:: .. ... : : : . : .: :: mKIAA1 TELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEAMYCYLRCIQSEVSFEGAYGNL 240 250 260 270 280 290 250 260 270 280 290 300 mKIAA0 QKALSKALESRDELKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEEQFKRLLFQ .. .:: . .:: mKIAA1 KRLYDKAAKMYHQLKKSETRKLSPSKKRCKDIKRLLVNFMYLQSLLQPKSSSVDSELTSL 300 310 320 330 340 350 1157 residues in 1 query sequences 1767860 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:15:49 2006 done: Mon Mar 27 10:15:50 2006 Scan time: 1.100 Display time: 0.090 Function used was FASTA [version 3.4t11 Apr 17, 2002]