FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1558.ptfa, 502 aa vs ./tmplib.26680 library 1768515 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.3204+/-0.00401; mu= 10.5820+/- 0.267 mean_var=92.3349+/-21.617, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1335 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1115 ( 774 res) mbg00401 ( 774) 1321 265 1.5e-71 mKIAA0685 ( 814 res) mid13080 ( 814) 1013 206 1.1e-53 >>mKIAA1115 ( 774 res) mbg00401 (774 aa) initn: 1573 init1: 1318 opt: 1321 Z-score: 1376.9 bits: 264.9 E(): 1.5e-71 Smith-Waterman score: 1427; 48.111% identity (61.893% ungapped) in 503 aa overlap (1-491:10-412) 10 20 30 40 50 mKIAA1 PCFQSMFWKFDLHSSSHIDTLLEREDVTLKELMDEEDVLQECKAQNRKLIE : .::::::::.:::.:::::.::..: ::.::::::::::. ::::.. mKIAA1 APSARSRRPPAQGAMFWKFDLHTSSHLDTLLEKEDLSLPELLDEEDVLQECKVVNRKLLD 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 FLLKAECLEDLVSFIIEEPPQDMDEKIRYKYPNISCELLTSDVSQMNDRLGEDESLLMKL :::. :. .:... .::: . .:..:::::...::.::::: :.:: :: ::::: .: mKIAA1 FLLQPSHLQAMVAWVTQEPPASGEERLRYKYPSVACEILTSDVPQINDALGADESLLNRL 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 YSFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLL :.:: . . ::::::::::::..:::.:: .:.:.::.:: :::::...::::::::::: mKIAA1 YGFLQSGDSLNPLLASFFSKVMGILINRKTDQLVSFLRKKDDFVDLLLRHIGTSAIMDLL 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 LRLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQM ::::::.: :: ::::.::::::.:.:::.: .:::.....:::::::::.:.::::.:: mKIAA1 LRLLTCVERPQLRQDVFNWLNEEKIVQRLIEQIHPSKDDNQHSNASQSLCDIIRLSREQM 190 200 210 220 230 240 240 250 260 270 280 mKIAA1 LQVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRP----- .: :.: ::: ::::::::: :::::::.:. :. .:.:::.::.:::::: ::: mKIAA1 IQGQDSPEPDQLLATLEKQETIEQLLSNMFEGEQCQSVIVSGIQVLLTLLEPRRPRSDSV 250 260 270 280 290 300 290 300 310 320 330 mKIAA1 -------TFEGHIEICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWG . .:..:. : .: : . ..:.:.: :: ::.::::::: mKIAA1 TMNNFFSSVDGQLELLAQGALDNALS-SMGALHALRPRLDRFHQLLLEPPKV-------- 310 320 330 340 350 340 350 360 370 380 390 mKIAA1 ILDPPVGNTRLNVIRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEI mKIAA1 ------------------------------------------------------------ 400 410 420 430 440 450 mKIAA1 CIALILASPFENAENGTITDQDSTGDNLLLKHLFQKCQLIERILEAWDTNEKKQAEGGRR .:.:.:.:.:::: .:. :.. :. :: : mKIAA1 -------------------------------QLLQHCRLVERILASWEENDRVQSGGGPR 360 370 380 460 470 480 490 500 mKIAA1 HGYMGHLTRIANCIVHSTDKGPNSALVQQLIKGKLVNNLITCV .::::::::.:: .:.....:::. . ::.: mKIAA1 KGYMGHLTRVANAVVQNAEQGPNAEQLGQLLKELPEEQQQRWEAFVSGPLAETNKKNTVD 390 400 410 420 430 440 mKIAA1 LVNTHHLHSSSDDEDDRLKEFNFPEEAVLQQAFMDFQMQRMTSAFIDHFGFNDEEFGEQE 450 460 470 480 490 500 >>mKIAA0685 ( 814 res) mid13080 (814 aa) initn: 882 init1: 636 opt: 1013 Z-score: 1056.1 bits: 205.6 E(): 1.1e-53 Smith-Waterman score: 1240; 51.344% identity (54.728% ungapped) in 372 aa overlap (143-492:2-372) 120 130 140 150 160 170 mKIAA1 SFLLNESPLNPLLASFFSKVLSILISRKPEQIVDFLKKKRDFVDLIIKHIGTSAIMDLLL :.. :::::. :.. ..:::::::.::::: mKIAA0 LQVIMFLKKKEKFISQLLKHIGTSALMDLLL 10 20 30 180 190 200 210 220 230 mKIAA1 RLLTCIEPPQPRQDVLNWLNEERIIQRLVEIVHPSQEEDRHSNASQSLCEIVRLSRDQML ::..:.:: ::.::.:::::.::::.: ..:: :.:::.:::::.::.:.::.::: mKIAA0 RLVSCVEPVGLRQEVLHWLNEEKIIQRIVALIHPHQDEDRQSNASQALCDIIRLGRDQGS 40 50 60 70 80 90 240 250 260 270 280 290 mKIAA1 QVQNSTEPDPLLATLEKQEIIEQLLSNIFHKEKNESAIVSAIQILLTLLETRRPTFEGHI :.:...:::::: :::.:. .::::.:.: ...:: .::..:.::.::: :: :: . mKIAA0 QLQETVEPDPLLITLESQDCVEQLLKNMFDGDQTESCLVSGMQVLLALLEPRRVGTEGLV 100 110 120 130 140 150 300 310 320 330 340 350 mKIAA1 EICPPGMSHSACSVNKSVLEAIRGRLGSFHELLLEPPKKSVMKTTWGILDPPVGNTRLNV . :. .: ::..:.:..:. : .::.:::.::::... :: :.:. :.::.::. mKIAA0 DSFSQGLERSH-SVSSSILRGIEPWLKNFHQLLLNPPKKKAILTTIGVLEEPLGNARLHG 160 170 180 190 200 210 360 370 380 390 400 410 mKIAA1 IRLISSLLQTNTSSINGDLMELNSIGVILDMFFKYTWNNFLHTQVEICIALIL--ASPFE ::...::.::: .:: .: .::.. ..::.::::::::::: :::.::: :: :. : mKIAA0 ARLMAALLHTNTPGINQELCRLNTMDLLLDLFFKYTWNNFLHLQVELCIAAILSHAAREE 220 230 240 250 260 270 420 430 440 450 mKIAA1 NAE----NGTITDQDSTGD----------------NLLLKHLFQKCQLIERILEAWDTNE .:: .: . ...:: : .. :::::: :..::::::..:. mKIAA0 QAEASGSDGKVEPLQGSGDGNGKLETTPSITSPPENTMVTHLFQKCCLVQRILEAWEAND 280 290 300 310 320 330 460 470 480 490 500 mKIAA1 KKQAEGGRRHGYMGHLTRIANCIVHSTDKGPNSALVQQLIKGKLVNNLITCV . :: :: :.: ::::::::: .:.. ..:: .: ....:.: mKIAA0 HTQAAGGMRRGNMGHLTRIANAVVQNLEQGPVQAHISEVIRGLPADCRGRWESFVEETLM 340 350 360 370 380 390 mKIAA0 ETNRRNTVDLVSTHHLHSSSEDEDIEGTFPNELSLQQAFSEYQIQQMTANFVDQFGFNDE 400 410 420 430 440 450 502 residues in 1 query sequences 1768515 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:48:06 2006 done: Mon Mar 27 10:48:07 2006 Scan time: 0.670 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]