FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1214.ptfa, 397 aa
 vs ./tmplib.26680 library

1768620 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.8546+/-0.00451; mu= 13.9204+/- 0.302
 mean_var=98.7078+/-22.901, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.1291

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4183  ( 270 res)   mfj08061                   ( 270)  670  135 6.7e-33


>>mKIAA4183  ( 270 res)   mfj08061                        (270 aa)
 initn: 676 init1: 382 opt: 670  Z-score: 683.0  bits: 134.7 E(): 6.7e-33
Smith-Waterman score: 670;  48.523% identity (52.273% ungapped) in 237 aa overlap (148-379:45-269)

       120       130       140       150       160       170       
mKIAA1 QACRSLALSTWLLSFCFVHLLCLDFTVAEKEEWYTAFVNITYLEPEPGAAVAGSGGGAEL
                                     .:.:::..:.:  ::         : :. :
mKIAA4 SGAARAGPARLAALALLTCSLWPTRADNASQEYYTALINVTVQEP---------GRGTPL
           20        30        40        50                 60     

       180       190       200          210       220       230    
mKIAA1 HTEKSECGRYGEHSPKQDARGEVVMA---SSAQDRLACDPNTKFVAPAHGKHWIALIPKG
        : . . ::::  ::: ..::.:.      .. :.:.:::.:.: .: . :.::::. .:
mKIAA4 -TFRIDRGRYGLDSPKAEVRGQVLAPLPIHGVADHLGCDPQTRFFVPPNIKQWIALLQRG
           70        80        90       100       110       120    

          240       250       260       270       280       290    
mKIAA1 NCTYRDKIRNAFLQNASAVVIFNVGSNTNETITMPHAGVEDIVAIMIPEPKGKEIVSLLE
       :::...::  : ..:: ::::.:  :. .: .:: : :. ::.:.:: : .::.:.: ::
mKIAA4 NCTFKEKISRAAFHNAVAVVIYNNKSK-EEPVTMTHPGTGDIIAVMITELRGKDILSYLE
          130       140       150        160       170       180   

          300       310       320       330       340       350    
mKIAA1 RNITVTMYITIGTRNLQKYVSRTSVVFVSISFIVLMIISLAWLVFYYIQRFRYANARDRN
       .::.: : :..:::   :  :: :.:::::::::::::: :::.::.::..::.::::::
mKIAA4 KNISVQMTIAVGTRMPPKNFSRGSLVFVSISFIVLMIISSAWLIFYFIQKIRYTNARDRN
           190       200       210       220       230       240   

            360       370       380       390       
mKIAA1 Q--VSSSLRKAWLCKLSANHTCQGINVVAHKSRDSKCLLTPPHTC
       :  .... .:: . ::..  . .: .:                  
mKIAA4 QRRLGDAAKKA-ISKLTTRTVKKGDKVQ                 
           250        260       270                 




397 residues in 1 query   sequences
1768620 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:38:34 2006 done: Mon Mar 27 10:38:35 2006
 Scan time:  0.600 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]