FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4138.ptfa, 434 aa
 vs ./tmplib.26680 library

1768583 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.0378+/-0.00619; mu= 1.1236+/- 0.412
 mean_var=199.5368+/-47.926, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.0908

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0757  ( 540 res)   mbh01511                   ( 540)  195   37  0.0027


>>mKIAA0757  ( 540 res)   mbh01511                        (540 aa)
 initn: 159 init1: 159 opt: 195  Z-score: 151.5  bits: 37.4 E(): 0.0027
Smith-Waterman score: 195;  22.493% identity (24.128% ungapped) in 369 aa overlap (72-430:94-447)

              50        60        70        80        90       100 
mKIAA4 VLWQILVEDFDLHGALQDDALALFTDGLWGRADLAPALQDLARAFELLELAAVHLYLLPW
                                     :.  . .:. :  :: .::  :..:.:.::
mKIAA0 AAATLLSLHKVDPLYRFRLIQFYEVVESSLRSLSSSSLSALHCAFSMLETMAINLFLFPW
            70        80        90       100       110       120   

             110       120       130       140       150       160 
mKIAA4 RKEFTTIKTFSGGYVHVLKGVLSEELLTRSFQKMGYVRRDNHRLMVTTPPPACQLVQVAL
       .::: .::.  : .:. .:..: :. .   .. :::  . .    .     . :. .:..
mKIAA0 KKEFRSIKVRWGPFVYYVKSTLLEKDIRAILRFMGYEPELGTVYKLKELVESLQVKMVSF
           130       140       150       160       170       180   

             170       180       190        200       210       220
mKIAA4 GCFALRLECEILSEVLTQLGTSVLPAEELLRARRASG-DVASCVAWLQQRLAQDEEPPPL
         :  ..::: .  . .:.  .     ...  :..:  :. .:   :..:  . :.    
mKIAA0 ELFLAKVECEQMLGIHSQVKDKGYSELDVVAERKGSTEDARGCSDALRRRAESREHLTTS
           190       200       210       220       230       240   

                 230       240       250       260       270       
mKIAA4 PPR---GTPATYGAPVDLYQDLQEDESSEASLYGEPSPGLDSPPVELAYRPPLWEQSAKL
         :      :.  :  : :.      :  .. :     .  .::     .  :  ..  :
mKIAA0 MARVALQKSASERAAKDYYKPRVTKPSRSVDAYDSYWES-RKPPS----KASLSLRKEPL
           250       260       270       280            290        

       280           290       300       310       320       330   
mKIAA4 WGSGGQPWEP----PADDMHRASSPPYGALEEELEPEPSAFSFLSLRRELSRSGDLAPPE
         . :.  .     :. ..   :: :.:.  ..:    :  ..  ::     . : .   
mKIAA0 AMDVGEDLKDEIIRPSPSLLAMSSSPHGS-PDDLSSISSINGLGLLRSTYFSTQDDVDLY
      300       310       320        330       340       350       

           340       350       360       370       380        390  
mKIAA4 SPSSPRQASPRHRQAEAAASSAYGPAVEPLSYQAHSCLSPGNLPTLC-CDTCRQLHATHC
       . : :: :. :...:           ..:. :. .:   : .  .:  :..:    .  :
mKIAA0 TDSEPR-ATYRRQDALRPDVWLVKNDTHPI-YHKRS--PPTKESALSKCQNC----GLSC
       360        370       380        390         400             

            400       410       420        430                     
mKIAA4 TALSACRPTHSLRILLGDNQRRLWLQRAQV-DNLLYDSPGAHP                 
       .. : :.   :. .  . ..   . ..:.: :.: . .:                     
mKIAA0 SS-SLCQRCDSVLVCPSASKPSAFPSKASVHDSLAHGAPMREKYVGHQTQGLDRLAPVHS
     410        420       430       440       450       460        

mKIAA0 KPKPSTTATSRCGFCNRAGATNTCTQCSKVSCDACLGAYHYDPCCRKSELHKFLPNSQLN
      470       480       490       500       510       520        




434 residues in 1 query   sequences
1768583 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:03:02 2006 done: Mon Mar 27 11:03:03 2006
 Scan time:  0.690 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]