FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1708.ptfa, 1291 aa
 vs ./tmplib.26680 library

1767726 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 10.5666+/-0.00894; mu= -6.4199+/- 0.593
 mean_var=531.7154+/-124.784, 0's: 0 Z-trim: 13  B-trim: 0 in 0/36
 Lambda= 0.0556

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0449  ( 171 res)   mfj00177                   ( 171)  791   78 1.4e-15


>>mKIAA0449  ( 171 res)   mfj00177                        (171 aa)
 initn: 837 init1: 770 opt: 791  Z-score: 372.3  bits: 78.2 E(): 1.4e-15
Smith-Waterman score: 791;  70.345% identity (70.345% ungapped) in 145 aa overlap (1124-1268:2-146)

          1100      1110      1120      1130      1140      1150   
mKIAA1 WDLKRFQSTGKLTGHLGPVMCLTVDQISNGQDLIITGSKDHYIKMFDVTEGALGTVSPTH
                                     .::..:::::::.:::.. . . ::..:::
mKIAA0                              QHDLVVTGSKDHYVKMFQLGDCVTGTIGPTH
                                            10        20        30 

          1160      1170      1180      1190      1200      1210   
mKIAA1 NFEPPHYDGIEALAIQGDNLFSGSRDNGIKKWDLAQKGLLQQVPNAHKDWVCALGLVPGH
       ::::::::::: :::::: ::::::::::::::: :. :.::.:::::::::::..:::.
mKIAA0 NFEPPHYDGIECLAIQGDILFSGSRDNGIKKWDLDQQELIQQIPNAHKDWVCALAFVPGR
              40        50        60        70        80        90 

          1220      1230      1240      1250      1260      1270   
mKIAA1 PVLLSGCRGGILKLWNVDTFVPVGEMRGHDSPINAICVNSTHVFTAADDRTVRIWKAHNL
       :.:::.::.:..:.::::.:.:.::..::::::::::.:: :.:::..:  :..:.    
mKIAA0 PMLLSACRAGFIKVWNVDNFTPIGEIKGHDSPINAICTNSKHIFTASSDCRVKLWNYVPG
             100       110       120       130       140       150 

          1280      1290   
mKIAA1 QDGQLSDTGDLGEDIASN  
                           
mKIAA0 LTPCLPRRVLAIKGRATTLP
             160       170 




1291 residues in 1 query   sequences
1767726 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:51:24 2006 done: Mon Mar 27 10:51:26 2006
 Scan time:  1.220 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]