FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0333.ptfa, 1201 aa vs ./tmplib.26680 library 1767816 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.3601+/-0.00681; mu= -1.3019+/- 0.451 mean_var=309.3123+/-74.378, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.0729 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0244 ( 1184 res) mbh00105 (1184) 655 83 2.5e-16 >>mKIAA0244 ( 1184 res) mbh00105 (1184 aa) initn: 1095 init1: 642 opt: 655 Z-score: 385.5 bits: 83.4 E(): 2.5e-16 Smith-Waterman score: 1046; 40.335% identity (53.056% ungapped) in 538 aa overlap (672-1194:48-471) 650 660 670 680 690 mKIAA0 KLPGSAAVVGVTRKPMSANVPAASPAPGRLGP-VSP--APSQPNS-QIRQNIRRSLKEIL :: : : : :.:.. ::::..:.:::.:: mKIAA0 STALASTGERVARSGTHEKQETKKKKMEKGGPNVHPPAATSKPSADQIRQSVRHSLKDIL 20 30 40 50 60 70 700 710 720 730 740 750 mKIAA0 WKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRSIMFNLKDPKNQGLFH ::..::. : . :....:.: .::::.:..:. :: .::.::::.:::::::::. ::. mKIAA0 MKRLTDSN-LKIPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFK 80 90 100 110 120 130 760 770 780 790 800 810 mKIAA0 RVLREEISLAKLVRMKPEELVSKELSMWTEKPTKSVIESRTKLLNESK-----KNTTKPE .::. :.. .:.::.::::.::::. : .. .. .:: : : . : : : : mKIAA0 KVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGE 140 150 160 170 180 190 820 830 840 850 860 mKIAA0 TIPDMEDSPPVSDSEE----QQESVRAAPEKS--AAPLLDVFSSMLKDTTSQHRAHLFDL ..:.. :....: :. :. . :: . . .: :::::::: ::::: mKIAA0 I--EIESDAPMKEQEAAIEIQEPSANKSMEKPDVSEKQKEEVDSTSKDTTSQHRQHLFDL 200 210 220 230 240 250 870 880 890 900 910 920 mKIAA0 NCKICTGQVPSSEDEPAPKKQKLSASSKKEDFKPRHDSSPPNAVPNTADEGIADTLPENA ::::: :.. :. .:: :. ... . .:.. : : :..::.: mKIAA0 NCKICIGRMAPPIDDLSPKTVKVVVGGAR-----KHSD-------NEA-ESLADAL---- 260 270 280 290 930 940 950 960 970 980 mKIAA0 SEPDPESTSSLNQERKCFPESPGDSHPEPSSLGGLSPSSASGGSGVVTTVTMSGRDPRTA : ::.: .:.: ::: mKIAA0 SSTTNILTSDLFEEEK--QESP-------------------------------------- 300 310 990 1000 1010 1020 1030 1040 mKIAA0 LSGSCTVTASMAAHLDNSQASETKLDMIKPALTSAVVPKSILAKPSSSPDPRYLSVPPSP : . :: :: : : mKIAA0 -------------------------------------------KSTFSPTPR----PEMP 320 330 1050 1060 1070 1080 1090 1100 mKIAA0 SISESRSPPEGDTTLFLSRLNTIWKGFINMQSVAKFVTKAYPVSGCLDYLSEDLPDTIHI . : .: ::.::: :::::::: :::::::::::::: .::.:::::.:.. mKIAA0 GTVEVEST-------FLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQV 340 350 360 370 380 1110 1120 1130 1140 1150 1160 mKIAA0 GGRIAPKTVWDYVGKLKSSVSKELCLIRFHPATEEEEVAYISLYSYFSSRGRFGVVANNN ::::.:.:::::: :.:.: .::.:..:: :.:::....: :..::::: :.::.::: mKIAA0 GGRISPQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNM 390 400 410 420 430 440 1170 1180 1190 1200 mKIAA0 RHVKDLYLIPLSAKDPVPSKLLPFEGPGKHPVSGR ..:::.:::::.: : .: :.::.::: mKIAA0 KQVKDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRPHSASAGPSHTG 450 460 470 480 490 500 1201 residues in 1 query sequences 1767816 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:17:59 2006 done: Mon Mar 27 10:18:00 2006 Scan time: 1.110 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]