FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1546.ptfa, 614 aa
 vs ./tmplib.26680 library

1768403 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 10.0512+/-0.0084; mu= -8.0848+/- 0.556
 mean_var=409.6294+/-97.971, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0634

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0401  ( 179 res)   mbg07315                   ( 179)  496   59 4.4e-10
mKIAA1676  ( 1373 res)   mpm11077                  (1373)  304   42 0.00031


>>mKIAA0401  ( 179 res)   mbg07315                        (179 aa)
 initn: 485 init1: 377 opt: 496  Z-score: 273.3  bits: 58.9 E(): 4.4e-10
Smith-Waterman score: 496;  49.721% identity (54.601% ungapped) in 179 aa overlap (446-614:7-179)

         420       430       440       450       460       470     
mKIAA1 LSRVLPGFNHDRTASAQELLYSLTGSSQEKQPEVSGQDAAAVQEIEYWSDSEHNFQDPCI
                                     . : ::  .   .: : :::::::: :  :
mKIAA0                         PSKGVVKEEKSGPTVEEEEE-ELWSDSEHNFLDENI
                                       10        20         30     

         480       490       500       510       520       530     
mKIAA1 GGVAIAPTHGSILIECAKCEVHATTKVNDPDRNHPTRISLVLYRHKNLFLPKHCLALWEA
       ::::.::.: :::::::. :.:::: .. :.: ::::::::.:.::::  :.: ::::::
mKIAA0 GGVAVAPAHCSILIECARRELHATTPLKKPNRCHPTRISLVFYQHKNLNQPNHGLALWEA
          40        50        60        70        80        90     

            540        550       560             570       580     
mKIAA1 KM---AEKAR-KEEECGKNGSDHVSQKNHGKQEK------REPTGPQEPSYLRFIQSLAE
       ::   ::.:: ..:: .. :  .   : .::..:       ::   .. . .   :.:: 
mKIAA0 KMKQLAERARQRQEEAARLGLGQQEAKLYGKKRKWGGAMVAEPQHKEKKGAIPTRQALA-
         100       110       120       130       140       150     

         590       600       610    
mKIAA1 NTGSVTTDSTVTTSPYAFTQVTGPYNTFV
           . :::.::.: ::.:.:::::. ..
mKIAA0 ----MPTDSAVTVSSYAYTKVTGPYSRWI
              160       170         

>>mKIAA1676  ( 1373 res)   mpm11077                       (1373 aa)
 initn: 436 init1: 272 opt: 304  Z-score: 168.3  bits: 42.4 E(): 0.00031
Smith-Waterman score: 310;  38.750% identity (44.604% ungapped) in 160 aa overlap (370-528:1226-1365)

     340       350       360       370       380       390         
mKIAA1 PNVHHLATFSPYPTPKMDSHFMGAASRSPYSHPHTDYKTSEHHLPSHTIYSYTAAASGSS
                                     .::: .  :..   : :      :    : 
mKIAA1 LHCTMPSGAHSGANAAAGECTGTVQPAEVAAHPHQSLPTADS--PVH------AEPLTSP
        1200      1210      1220      1230        1240             

     400       410       420        430       440       450        
mKIAA1 SSHAFHNKENDNIANGLSRVLPGF-NHDRTASAQELLYSLTGSSQEKQPEVSGQDAAAVQ
       : .   :. :..        :: . : .. :: :        ... ..::    :    :
mKIAA1 SEQLTSNQSNQQ--------LPLLSNSQKLASCQVEDERHPEADEPQHPE----DDNLPQ
      1250              1260      1270      1280          1290     

      460       470       480       490       500       510        
mKIAA1 EIEYWSDSEHNFQDPCIGGVAIAPTHGSILIECAKCEVHATTKVNDPDRNHPTRISLVLY
         :.:::::. . :: .::::::: :::.:::::. :.::::.. .: :. : :.:::.:
mKIAA1 LDEFWSDSEEIYADPSFGGVAIAPIHGSVLIECARKELHATTSLRSPKRGVPFRVSLVFY
        1300      1310      1320      1330      1340      1350     

      520       530       540       550       560       570        
mKIAA1 RHKNLFLPKHCLALWEAKMAEKARKEEECGKNGSDHVSQKNHGKQEKREPTGPQEPSYLR
       .::.:  :.:                                                  
mKIAA1 QHKSLNKPNHGFDINKIK                                          
        1360      1370                                             




614 residues in 1 query   sequences
1768403 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:47:49 2006 done: Mon Mar 27 10:47:50 2006
 Scan time:  0.770 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]