FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0299.ptfa, 333 aa vs ./tmplib.26680 library 1768684 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.0279+/-0.00563; mu= 8.5044+/- 0.375 mean_var=145.4782+/-33.568, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.1063 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0716 ( 2035 res) mbg02304 (2035) 948 157 6.6e-39 mKIAA1494 ( 914 res) mpm09319 ( 914) 168 37 0.0041 >>mKIAA0716 ( 2035 res) mbg02304 (2035 aa) initn: 1026 init1: 910 opt: 948 Z-score: 790.9 bits: 157.3 E(): 6.6e-39 Smith-Waterman score: 1015; 50.338% identity (54.380% ungapped) in 296 aa overlap (41-332:13-290) 20 30 40 50 60 mKIAA0 AARGVSRSVRTWHPAVAVASRTACEGCAAYCPAP-PDRPRLASR--CATAGPAAAPAAVP :::: : : . .: :... :. : mKIAA0 CQCRLRSPGSRPCPAPQPARSAVLQRHSCSSG---AVHCCEP 10 20 30 70 80 90 100 110 120 mKIAA0 CELSPSRRARG-AAPGPAMWTPTEEEKYGVVICSFRGSVPQGLVLEIGETVQILEKCEGW : . ::. ..: ::: :::.::::::: ::::.:: :: ::::.::::::::.:: mKIAA0 LEGRGDCTARSPSTPFIAMWIPTEHEKYGVVIASFRGTVPYGLSLEIGDTVQILEKCDGW 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA0 YRGVSTKKPNVKGLFPANYIHLKKAIVSNRGQYETVVPLEDSIVTEVTTTLQEWASLWKQ ::: . :.::.::.::..:.:::.: :.:.::.: :.: :::..::.:.::..:...::: mKIAA0 YRGFALKNPNIKGIFPSSYVHLKNACVKNKGQFEMVIPTEDSVITEMTSTLRDWGTMWKQ 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA0 LYVKHKVDLFYKLRHVMNELIDLRRQLLSGHLTQDQVREVKRHITVRLDWGNEHLGLDLV :::... :::..: :.:::..:::::.: ::::.:....::::::.:::::::.:::::: mKIAA0 LYVRNEGDLFHRLWHIMNEILDLRRQVLVGHLTHDRMKDVKRHITARLDWGNEQLGLDLV 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA0 PRKDFEVVDSDQISVSDLYKMHLSSRQSVQQSTSQVDTMRPRHGETCRMPVPHHFFFSLK :::.. .:: ..::...::.. . :. ... :... ::.: ..: mKIAA0 PRKEYAMVDPEDISITELYRL-MEHRHRKKDTPVQASS--------------HHLFVQMK 220 230 240 250 260 310 320 330 mKIAA0 SFTYNTIGEDSDVFFSLYDMREGKQIR :. ...::. .:.:::.: .:.. : mKIAA0 SLMCSNLGEELEVIFSLFDSKENRPISERFFLRLNRNGLPKAPDKPERHCSLFVDLGSSE 270 280 290 300 310 320 >>mKIAA1494 ( 914 res) mpm09319 (914 aa) initn: 115 init1: 115 opt: 168 Z-score: 148.2 bits: 37.2 E(): 0.0041 Smith-Waterman score: 168; 30.159% identity (33.333% ungapped) in 126 aa overlap (42-158:420-542) 20 30 40 50 60 70 mKIAA0 ARGVSRSVRTWHPAVAVASRTACEGCAAYCPAPPDRPRLASRCATAGPAAAPAAVPCELS : :: : ::. .. :..: ::: . mKIAA1 PPPSSPVTTGPAFTFPSDVPYQAALGSMNPPLPPP-PLLAATVLASTPSGATAAVAAAAA 390 400 410 420 430 440 80 90 100 110 120 mKIAA0 PSRRARGAAPGPAMWT--------PTEEEKYGVVICSFRGSVPQGLVLEIGETVQILEKC . : : .: :.: . : . . :.: . . : :. :: ..:.: mKIAA1 AAAAA-GMGPRPVMGSSEQIAHLRPQTRPSVYVAIYPYTPRKEDELELRKGEMFLVFERC 450 460 470 480 490 500 130 140 150 160 170 180 mKIAA0 E-GWYRGVSTKKPNVKGLFPANYIHLKKAIVSNRGQYETVVPLEDSIVTEVTTTLQEWAS . :::.:.: . .. :.::.::. :.: .: mKIAA1 QDGWYKGTSMHTSKI-GVFPGNYVAPVTRAVTNASQAKVSMSTAGQASRGVTMVSPSTAG 510 520 530 540 550 560 190 200 210 220 230 240 mKIAA0 LWKQLYVKHKVDLFYKLRHVMNELIDLRRQLLSGHLTQDQVREVKRHITVRLDWGNEHLG mKIAA1 GPTQKPQGNGVAGNPSVVPTAVVSAAHIQTSPQAKVLLHMSGQMTVNQARNAVRTVAAHS 570 580 590 600 610 620 333 residues in 1 query sequences 1768684 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:16:56 2006 done: Mon Mar 27 10:16:56 2006 Scan time: 0.560 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]