FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4072.ptfa, 390 aa
 vs ./tmplib.26680 library

1768627 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.5028+/- 0.005; mu= 5.5398+/- 0.333
 mean_var=151.5935+/-36.048, 0's: 0 Z-trim: 4  B-trim: 2 in 1/35
 Lambda= 0.1042

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0428  ( 384 res)   mbg00095                   ( 384) 1463  231   8e-62


>>mKIAA0428  ( 384 res)   mbg00095                        (384 aa)
 initn: 928 init1: 736 opt: 1463  Z-score: 1202.3  bits: 231.2 E(): 8e-62
Smith-Waterman score: 1619;  70.381% identity (76.677% ungapped) in 341 aa overlap (12-347:4-321)

               10        20        30        40        50        60
mKIAA4 PKGTEPKVVLIMALNVAPVRDTKWLTLEVCRQYQRGTCSRSDEECKFAHPPKSCQVENGR
                  ::..:.:.::::::::::::..::::::: : ::::::: :::::::::
mKIAA0         NINMAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGR
                       10        20        30        40        50  

               70        80        90       100       110          
mKIAA4 VIACFDSLKGRCSRENCKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQF---MFP
       ::::::::::::::::::::::: ::::::::::::::::::. : :::::::.   :.:
mKIAA0 VIACFDSLKGRCSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMA-MLAQQMQLANAMMP
             60        70        80        90        100       110 

       120       130       140       150       160       170       
mKIAA4 GTPLHPVPTFPVGPTIGTNAAISFAPYLAPVTPGVGLVPTEVLPTTPVIVPGSPPVTVPG
       :.::.::: : :.:...:.:. .: :::.::.:.  :::.:.:::.:..: :.: : ::.
mKIAA0 GAPLQPVPMFSVAPSLATSASAAFNPYLGPVSPS--LVPAEILPTAPMLVTGNPGVPVPA
             120       130       140         150       160         

       180         190       200       210       220       230     
mKIAA4 STAT--QKLLRTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTNDNTVTVCMDYIKG
       ..:.  :::.:::.::::::.::::: :::.:::::::::::::::::::::::::::::
mKIAA0 AAAAAAQKLMRTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKG
     170       180       190       200       210       220         

         240       250       260       270       280       290     
mKIAA4 RCMREKCKYFHPPAHLQAKIKAAQHQANQAAVAAQAAAAAATVMTQSTAKALKRPLEATV
       :: :::::::::::::::::::::.:.:::: ::::::.::.                  
mKIAA0 RCSREKCKYFHPPAHLQAKIKAAQYQVNQAA-AAQAAATAAA------------------
     230       240       250       260        270                  

         300       310       320       330       340       350     
mKIAA4 DLAFPPGALHPLPKRQALEKSNGASTVFNPSVLHYQQALTSAQLQQHTAFIPTDNSEIIN
        ...: ..: ::::: ::::.:::..::: ....:::::.. ::::::::.:        
mKIAA0 -MGIPQAVLPPLPKRPALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPPGSILCMT
               280       290       300       310       320         

         360       370       380       390                    
mKIAA4 RNGMECQESALRITKHCYCTYYPVSSSIELPQTAC                    
                                                              
mKIAA0 PATSVVPMVHGATPATVSAATTSATSVPFAATATANQIPIISAEHLTSHKYVTQM
     330       340       350       360       370       380    




390 residues in 1 query   sequences
1768627 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:01:00 2006 done: Mon Mar 27 11:01:00 2006
 Scan time:  0.610 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]