FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0779.ptfa, 662 aa vs ./tmplib.26680 library 1768355 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.3140+/-0.00595; mu= 4.5999+/- 0.396 mean_var=199.7853+/-46.302, 0's: 0 Z-trim: 3 B-trim: 24 in 1/35 Lambda= 0.0907 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0481 ( 690 res) mfj14098 ( 690) 1958 269 9.8e-73 >>mKIAA0481 ( 690 res) mfj14098 (690 aa) initn: 1992 init1: 854 opt: 1958 Z-score: 1398.2 bits: 269.1 E(): 9.8e-73 Smith-Waterman score: 2136; 54.790% identity (59.416% ungapped) in 668 aa overlap (26-660:41-689) 10 20 30 40 50 mKIAA0 NFLSLQISLLSLLMEPSGSEQLYEDPDPGGKSQDAEARRQTESEQKLSKMTHNAL :.:: .:. . .. :.::. . mKIAA0 LLPGADLRHGEASSANSAGGPTSDAGAAVAPNPGPRSKPPDLKKI----QQLSEGS---- 20 30 40 50 60 60 70 80 90 100 mKIAA0 ENINVIGQGLKHLFQHQRRRSSVSPHDVQQIQTDPEPEVDLDSQNACAEID--------- ..:.:::::: :.:::: :...: . . . :..:.. : . mKIAA0 ----MFGHGLKHLF-HSRRRSREREHQASQEAQQQQQQQGLSDQDSPDEKERSPEMHRVS 70 80 90 100 110 110 120 130 140 150 mKIAA0 -GVSTH-----PTALNRVLQQIRVPPKMKRGTSLHS------RRGKS---EAPKGSPQIN .:: : :::.:::::::: :..:::.:::: ::.:: : .:::.. mKIAA0 YAVSLHDLPARPTAFNRVLQQIRSRPSIKRGASLHSSGGSGGRRAKSSSLEPQRGSPHLL 120 130 140 150 160 170 160 170 180 190 200 mKIAA0 RKSGQE--VAAVIQ--SGRPRSSSTTDAPTSSSVMEIACAAGVCVPGEEATAERIERLEV ::. :. .::... .:::::::::: .. .. . .: . . :. ... .. .. mKIAA0 RKAPQDSSLAAILHQHQGRPRSSSTTD---TALLLADGSSAYLLAEEAESIGDKGDKGDL 180 190 200 210 220 230 210 220 230 240 250 260 mKIAA0 SSLAQTSSAVASSTDGSIHTESVDGIPDPQRTKAAIAHLQQKILKLTEQIKIAQTARDDN .:. :. ...:: : . :: :::::::::: ::.:::::.:::::: : ::::: mKIAA0 VALSLPSGPGHGDSDGPISLDVPDGAPDPQRTKAAIEHLHQKILKITEQIKIEQEARDDN 240 250 260 270 280 290 270 280 290 300 310 320 mKIAA0 VAEYLKLANSADKQQAARIKQVFEKKNQKSAQTILQLQKKLEHYHRKLREVEQNGIPRQP :::::::::.:::::..::::::::::::::::: ::.::::::.:.:.:.:::: ::: mKIAA0 VAEYLKLANNADKQQVSRIKQVFEKKNQKSAQTIAQLHKKLEHYRRRLKEIEQNGPSRQP 300 310 320 330 340 350 330 340 350 360 370 380 mKIAA0 KDVFRDMHQGLKDVGAK----VTGFSEGVVDSVKGGFSSFSQATHSAAGAVVSKPREIAS :::.:::.::::::::. ..::. :::..:::..:..:::::.: :::::::.:: mKIAA0 KDVLRDMQQGLKDVGANMRAGISGFGGGVVEGVKGSLSGLSQATHTA---VVSKPREFAS 360 370 380 390 400 410 390 400 410 420 430 440 mKIAA0 LIRNKFGSADNIPNLKDSLEEGQVDDGGKALGVISNFQSSPKYGSEEDCSSATSGSVGAN :::::::::::: .::: .:.: .....::. ... :::::::...::::...:.::. mKIAA0 LIRNKFGSADNIAHLKDPMEDGPPEEAARALSGSATLVSSPKYGSDDECSSASASSAGAG 420 430 440 450 460 470 450 460 470 480 490 500 mKIAA0 STTGGIAVGA-SSSKTNTLDMQSSGFDALLHEVQEIRETQARLEDSFETLKEHYQRDYSL :..:. :: .: ..::: ...:.::.:..::.: :..::::.: :: . ::::. mKIAA0 SNSGAGPGGALGSPRSNTLYGAPGNLDTLLEELREIKEGQSHLEDSMEDLKTQLQRDYTY 480 490 500 510 520 530 510 520 530 540 550 560 mKIAA0 IMQTLQEERYRCERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALE . : ::::::: :::::::::::::::::. ::::::::::::.::::::::::::::.: mKIAA0 MTQCLQEERYRYERLEEQLNDLTELHQNEMTNLKQELASMEEKVAYQSYERARDIQEAVE 540 550 560 570 580 590 570 580 590 600 610 620 mKIAA0 ACQTRISKMELQQQQQQVVQLEGLENATARNLLGKLINILLAVMAVLLVFVSTVANCVVP .: ::..:.::::::::::::::.:::.:: ::::.::..::.::::::::::.:: ..: mKIAA0 SCLTRVTKLELQQQQQQVVQLEGVENANARALLGKFINVILALMAVLLVFVSTIANFITP 600 610 620 630 640 650 630 640 650 660 mKIAA0 LMKTRNRTFSTLFLVAFIAFLWKHWDALFSYVDRLFSPPR ::::: : :: .:. . .::::: .: ..... : mKIAA0 LMKTRLRITSTALLLLVLFLLWKHWASLTYLLEHVLLPS 660 670 680 690 662 residues in 1 query sequences 1768355 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:28:28 2006 done: Mon Mar 27 10:28:29 2006 Scan time: 0.840 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]