# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg14960.fasta.nr -Q ../query/mKIAA1853.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1853, 372 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7897494 sequences Expectation_n fit: rho(ln(x))= 5.9332+/-0.000214; mu= 6.2884+/- 0.012 mean_var=162.2384+/-30.241, 0's: 27 Z-trim: 96 B-trim: 255 in 2/66 Lambda= 0.100693 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|9280114|dbj|BAB01611.1| unnamed protein product ( 375) 1687 257.0 4.9e-66 gi|18848286|gb|AAH24130.1| 1500001A10Rik protein [ ( 120) 741 118.9 5.8e-25 gi|47221505|emb|CAG08167.1| unnamed protein produc ( 732) 614 101.5 6.1e-19 gi|47223752|emb|CAF98522.1| unnamed protein produc ( 611) 535 89.9 1.6e-15 gi|158854042|ref|NP_001103669.1| hypothetical prot ( 653) 502 85.1 4.5e-14 gi|73957778|ref|XP_849954.1| PREDICTED: similar to ( 440) 494 83.8 7.9e-14 gi|109495573|ref|XP_001065654.1| PREDICTED: hypoth ( 498) 490 83.2 1.3e-13 gi|81873343|sp|Q80WV7.1|SRR2L_MOUSE RecName: Full= ( 648) 491 83.5 1.4e-13 gi|109497194|ref|XP_001077322.1| PREDICTED: simila ( 676) 490 83.4 1.5e-13 gi|114614143|ref|XP_531037.2| PREDICTED: hypotheti ( 377) 486 82.5 1.6e-13 gi|109066255|ref|XP_001114825.1| PREDICTED: hypoth ( 549) 488 83.0 1.7e-13 gi|149269767|ref|XP_001478231.1| PREDICTED: hypoth ( 776) 464 79.7 2.3e-12 gi|109463712|ref|XP_001078830.1| PREDICTED: hypoth ( 426) 447 76.9 8.8e-12 gi|224076183|ref|XP_002193192.1| PREDICTED: simila ( 513) 448 77.2 8.9e-12 gi|134065503|emb|CAM43270.1| proteophosphoglycan p (4324) 433 76.2 1.4e-10 gi|126321338|ref|XP_001379356.1| PREDICTED: hypoth ( 359) 414 72.0 2.2e-10 gi|134065504|emb|CAM43271.1| proteophosphoglycan p (5384) 426 75.3 3.3e-10 gi|74876134|sp|Q75JC9.1|Y8484_DICDI RecName: Full= ( 374) 408 71.2 4.2e-10 gi|126343180|ref|XP_001373977.1| PREDICTED: hypoth (1008) 411 72.2 5.6e-10 gi|110749781|ref|XP_624549.2| PREDICTED: similar t ( 770) 406 71.3 7.8e-10 gi|63055532|gb|AAY29120.1| cement precursor protei ( 341) 401 70.1 8e-10 gi|63055567|gb|AAY29122.1| cement precursor protei ( 343) 395 69.2 1.5e-09 gi|189526683|ref|XP_001919147.1| PREDICTED: hypoth ( 370) 390 68.5 2.5e-09 gi|134073236|emb|CAM71958.1| proteophosphoglycan p (5967) 403 72.1 3.6e-09 gi|109500382|ref|XP_001071968.1| PREDICTED: hypoth ( 378) 386 68.0 3.8e-09 gi|158031840|gb|ABW09431.1| CG9915 [Drosophila mel ( 820) 387 68.6 5.5e-09 gi|110755144|ref|XP_001121745.1| PREDICTED: hypoth ( 743) 382 67.8 8.6e-09 gi|70905643|gb|AAZ14282.1| proteophosphoglycan ppg (2425) 387 69.2 1.1e-08 gi|189235381|ref|XP_969029.2| PREDICTED: similar t ( 763) 379 67.4 1.2e-08 gi|70905640|gb|AAZ14279.1| proteophosphoglycan ppg (1435) 379 67.7 1.7e-08 gi|28422195|gb|AAH44265.1| B52-prov protein [Xenop ( 660) 374 66.6 1.8e-08 gi|109501561|ref|XP_001072007.1| PREDICTED: hypoth ( 526) 372 66.1 1.9e-08 gi|47226305|emb|CAG09273.1| unnamed protein produc ( 779) 374 66.7 2e-08 gi|102231835|gb|ABF70658.1| hypothetical protein [ ( 648) 371 66.1 2.4e-08 gi|63055551|gb|AAY29121.1| cement precursor protei ( 306) 356 63.5 6.9e-08 gi|47218803|emb|CAG02788.1| unnamed protein produc (1355) 361 65.1 1e-07 gi|126337367|ref|XP_001372934.1| PREDICTED: hypoth ( 479) 354 63.5 1.1e-07 gi|57900228|dbj|BAD88333.1| peptidylprolyl cis-tra ( 698) 356 64.0 1.1e-07 gi|156552798|ref|XP_001601097.1| PREDICTED: hypoth ( 588) 354 63.6 1.3e-07 gi|149270040|ref|XP_001477240.1| PREDICTED: hypoth ( 372) 351 62.9 1.3e-07 gi|109489691|ref|XP_001078907.1| PREDICTED: hypoth ( 267) 349 62.4 1.3e-07 gi|222618441|gb|EEE54573.1| hypothetical protein O ( 978) 356 64.2 1.4e-07 gi|60466725|gb|EAL64776.1| RNA-binding region-cont (1035) 356 64.2 1.4e-07 gi|211904131|ref|NP_001122837.2| splicing factor, ( 813) 350 63.2 2.3e-07 gi|58737192|dbj|BAD89467.1| putative nuclear prote ( 674) 348 62.8 2.5e-07 gi|74221393|dbj|BAE42172.1| unnamed protein produc ( 745) 348 62.9 2.6e-07 gi|189514276|ref|XP_694356.3| PREDICTED: similar t ( 937) 349 63.1 2.7e-07 gi|81948111|sp|Q8BB47.1|IE2_HHV6G RecName: Full=Im (1466) 351 63.7 2.9e-07 gi|70905641|gb|AAZ14280.1| proteophosphoglycan ppg (7194) 360 65.9 3.1e-07 gi|163775000|gb|EDQ88626.1| predicted protein [Mon (2204) 351 63.9 3.7e-07 >>gi|9280114|dbj|BAB01611.1| unnamed protein product [Ma (375 aa) initn: 1483 init1: 1383 opt: 1687 Z-score: 1341.9 bits: 257.0 E(): 4.9e-66 Smith-Waterman score: 1687; 87.459% identity (94.389% similar) in 303 aa overlap (20-320:11-307) 10 20 30 40 50 60 mKIAA1 VTGTRPRSSAVSDGSFCFQITGSGSAADLFSKSASPLAATRGRSQEYDSGNDTSSPPSTQ :::::::::::.:.::::...:::::::::::::::::::: gi|928 MLGYLSARGVITGSGSAADLFTKTASPLTTSRGRSQEYDSGNDTSSPPSTQ 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 TSSARSRGQEKGSPGGDLSKSRDLNCGNTSDSGNSFTTSSPQNKGAVLETVSPACRSRES ::::::::::::::.: :::::.:: ::::::::::::::::::::.::..::. :.::: gi|928 TSSARSRGQEKGSPSGGLSKSRELNSGNTSDSGNSFTTSSPQNKGAMLENLSPTSRGRES 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 RGFQSPCLQCAEVKKSSLVPSTARSSPIKECSRSSSYTSTRSSSPSSRSPNPRASPRYTR ::::::::.:::::::::::::::.::.: :::::::.:::::: ::::::::::::::. gi|928 RGFQSPCLECAEVKKSSLVPSTARGSPMKGCSRSSSYASTRSSSHSSRSPNPRASPRYTQ 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SRSTSSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDLKYGEKEPQPR ::::::::::::::::::::::::::::::::::::::::::::::::: ::.::. : : gi|928 SRSTSSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDPKYSEKDSQQR 180 190 200 210 220 230 250 260 270 280 290 mKIAA1 ER--ARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSSSLSSASSWYS :: :::::::::::::::::::::::::::::::::::::::::::::.::::.::::: gi|928 ERERARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSGSLSSTSSWYS 240 250 260 270 280 290 300 310 320 330 340 350 mKIAA1 SSSSSSSSSSRSPSRSYSRSRSPSRSHSSRSQTRSRTRTSRSSSSRSLSLGSRSRSRNRS :::: :: ::::::::: gi|928 SSSS------RSASRSYSRSRSGVGAGAGVGAGPGAGPGAGPAQAAALAPAALAWAPAAG 300 310 320 330 340 >>gi|18848286|gb|AAH24130.1| 1500001A10Rik protein [Mus (120 aa) initn: 741 init1: 741 opt: 741 Z-score: 604.5 bits: 118.9 E(): 5.8e-25 Smith-Waterman score: 741; 100.000% identity (100.000% similar) in 120 aa overlap (253-372:1-120) 230 240 250 260 270 280 mKIAA1 SPSRERDLKYGEKEPQPRERARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRP :::::::::::::::::::::::::::::: gi|188 MRKRRRDSPSHLEARRITSARKRPIPYYRP 10 20 30 290 300 310 320 330 340 mKIAA1 SPSSSSSLSSASSWYSSSSSSSSSSSRSPSRSYSRSRSPSRSHSSRSQTRSRTRTSRSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|188 SPSSSSSLSSASSWYSSSSSSSSSSSRSPSRSYSRSRSPSRSHSSRSQTRSRTRTSRSSS 40 50 60 70 80 90 350 360 370 mKIAA1 SRSLSLGSRSRSRNRSLSYSSAESYASTRR :::::::::::::::::::::::::::::: gi|188 SRSLSLGSRSRSRNRSLSYSSAESYASTRR 100 110 120 >>gi|47221505|emb|CAG08167.1| unnamed protein product [T (732 aa) initn: 948 init1: 377 opt: 614 Z-score: 496.4 bits: 101.5 E(): 6.1e-19 Smith-Waterman score: 614; 46.440% identity (61.920% similar) in 323 aa overlap (47-344:425-731) 20 30 40 50 60 70 mKIAA1 CFQITGSGSAADLFSKSASPLAATRGRSQEYDSGNDTSSPPSTQTS-SARSRGQEKGSPG :::::::::::: .: : : .. : : gi|472 ILSSHPGSRLAGTDRKESRRLTGQNEGLHSYDSGNDTSSPPSGKTVISPASVAEGKRSRC 400 410 420 430 440 450 80 90 100 110 120 mKIAA1 GDLSKSRDLNCGNT-SDSGNSFTT-----SSPQNKG--AVL--ETVSPACRSRESRGFQS :.. . :. .. :::::: :. .: :. : :.: :. . : :.: .. : : gi|472 KHLDSPERLKITDSVSDSGNSVTSYHSLCKSYQEDGFSATLFNENSKRAQRQRSAKVF-S 460 470 480 490 500 510 130 140 150 160 170 180 mKIAA1 PCLQCAEVKKSSLVPSTARSSPIKE--CSR--SSSYTSTRSSSPSSRSPNPRASPRYTRS : ::.. : : .. :: : ::. : : : :: : : . . : .:: gi|472 LCR--AEIS----VGSRVEVSPQKASSCSQRMSRSSQSRRSCSSMRSSGSSKYCGRSSRS 520 530 540 550 560 190 200 210 220 230 mKIAA1 RSTSSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSP------SRERDLKYGEK :.:: . :::: : .. :: : : .: : . :: ::: ::: :.: ..: gi|472 LSSSSCS-SYSR--SLTDLSGPRRRGSLASLSS-AGSYCRYSSDRRSSTSRETDVKRSRK 570 580 590 600 610 620 240 250 260 270 280 290 mKIAA1 EPQPRERARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSSSLSSASS : ::::.::::..:::::::::::::::::::::::::.:::::::: .: :: gi|472 T-----RKRRRRKSYSPLKKRRRDSPSHLEARRITSARKRPIPYFRPSPSSSSHSASISS 630 640 650 660 670 300 310 320 330 340 350 mKIAA1 W---YSSSSSSSSSSSRSPS-RSYSRSRSPSRSHSSRSQTRSRTRTSRSSSSRSLSLGSR : .: . : : : ::: : :::::: : . .:::..::: .. . .: gi|472 WSSIFSRNRSRSRSRSRSSSYRSYSRSSSWNSIFGSRSRSRSRGSPNKRNRARR 680 690 700 710 720 730 360 370 mKIAA1 SRSRNRSLSYSSAESYASTRR >>gi|47223752|emb|CAF98522.1| unnamed protein product [T (611 aa) initn: 617 init1: 402 opt: 535 Z-score: 435.2 bits: 89.9 E(): 1.6e-15 Smith-Waterman score: 535; 42.320% identity (62.069% similar) in 319 aa overlap (44-345:306-604) 20 30 40 50 60 70 mKIAA1 GSFCFQITGSGSAADLFSKSASPLAATRGRSQEYDSGNDTSSPPSTQTSSARSRGQEKGS ::. ::: . . :..:.. : . gi|472 LRDFATWMCMLPLGGPCFVYLTFPVRVAPMSQQGDSGVEEKLRLLTSSSAGVLR---EPR 280 290 300 310 320 330 80 90 100 110 120 130 mKIAA1 PGGDLSKSRDLNCGNTSDSGNSFTTSSPQNKGAVLETVSPACRSRESRGFQSPCLQCAEV : :.:. :... .:.. .: . .::. . : : : .:: .:: : gi|472 LHGAASRSQT---GQAAAAGEA---GSADCRGAAAGSSSG--RRRGQRG-HSP----AAS 340 350 360 370 140 150 160 170 180 190 mKIAA1 KKSSLVPSTARSSPIKECSRSSSYTSTRSSSPSSRSPNPRASPRYTRSRST--SSEKRSY . :. : :. .. :... :.. :::. . :: . .: . :..:. gi|472 SDSAHSQHTHRGRTSRHQRRTKGGHSSKRHHRSSRAQAHHRSPSASPGRHSHASGRKKED 380 390 400 410 420 430 200 210 220 230 240 mKIAA1 SRS---PSY--SSKSGKRSPPSRSSRSR-----RSPSYSRYSPSRERDLKYGEKEPQPRE ::: : . :: :..:: .::.: .:: . : . ::::. . .. . gi|472 SRSKANPRHRSSSLSSRRSSSRSASRDRAASKAKSP-HVRQNHSRERE---SANHSDADS 440 450 460 470 480 490 250 260 270 280 290 300 mKIAA1 RARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSSSLSSASSWYSSSS ::::: :::::.::::::::: .::::::::::::::::::::::::: :: : : : gi|472 RARRRSRSYSPIRKRRRDSPSFMEARRITSARKRPIPYYRPSPSSSSSESSPSRSSRSRS 500 510 520 530 540 550 310 320 330 340 350 mKIAA1 SSSSSSSRSPSRSY--SRSRSPSRSHS-SRS--QTRSRTRTSRSSSSRSLSLGSRSRSRN :: : ::: .::: ::::: :::.: ::: :.:::.:. .: .::: gi|472 YSSYSRSRSHNRSYTRSRSRSWSRSRSQSRSWSQSRSRSRSHHSYNSRSSYDSPGF 560 570 580 590 600 610 360 370 mKIAA1 RSLSYSSAESYASTRR >>gi|158854042|ref|NP_001103669.1| hypothetical protein (653 aa) initn: 784 init1: 362 opt: 502 Z-score: 409.0 bits: 85.1 E(): 4.5e-14 Smith-Waterman score: 516; 38.462% identity (54.642% similar) in 377 aa overlap (23-347:289-648) 10 20 30 40 50 mKIAA1 VTGTRPRSSAVSDGSFCFQITGSGSAADLFSKSASPLAATRGRSQEYDSGND .:: . :.: :: ... : . ..:. gi|158 SSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSG 260 270 280 290 300 310 60 70 80 90 100 mKIAA1 TSS------P-----PSTQTSSARSRGQEKGSPGGDLSKSRDLNCGNTSDSGNSFTTSSP : : : . :: : ..:.. .. .: :. : : : . : gi|158 QRSGAHGGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPAR----GKESPSPRS--APSS 320 330 340 350 360 370 110 120 130 140 150 160 mKIAA1 QNKGAVLETVSPACRSRESRGFQSPCLQCAEVKKSSLVPSTARSSPIKECSRSSSYTSTR :..:. . : :. : .: : ... : : .: . ::: : . . gi|158 QGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRP---RPAPPRGSSRSLSRARSS 380 390 400 410 420 170 180 190 200 mKIAA1 SSSPSSR-SPNP---------------RASPRYTRSR--STSSEKRSYSRSPSYSSKSGK :.: :.: .:.: ::. : :.: ::: ...: . .::.. gi|158 SDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSS 430 440 450 460 470 480 210 220 230 240 mKIAA1 RSP-PS-RSSRSRRSPSYSR--------YSPSRE--------RDLKYGEKEPQPRE---- ::: : :: : :::: :: .:::: :: : :: . . : gi|158 RSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRD-KDGEGRARHSEAEAT 490 500 510 520 530 540 250 260 270 280 290 300 mKIAA1 RARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSSSLSSASSWYSSSS ::::: :::::.::::::::: .: ::::::::::::::::::::::: : :. gi|158 RARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLS-------SD 550 560 570 580 590 600 310 320 330 340 350 360 mKIAA1 SSSSSSSRSPSRSYSRSRSPSRSHSSRSQTRSRTRT-SRSSSSRSLSLGSRSRSRNRSLS :. : ::::: ..:.. ::::..::.::: .:: : : ::: : gi|158 YSTRSHSRSPSPGHSHGSYSSRSHGTRSRTRSPSRTPSPSYHSRSSSESGGF 610 620 630 640 650 370 mKIAA1 YSSAESYASTRR >>gi|73957778|ref|XP_849954.1| PREDICTED: similar to spl (440 aa) initn: 713 init1: 358 opt: 494 Z-score: 404.5 bits: 83.8 E(): 7.9e-14 Smith-Waterman score: 511; 39.039% identity (58.258% similar) in 333 aa overlap (36-356:144-437) 10 20 30 40 50 60 mKIAA1 PRSSAVSDGSFCFQITGSGSAADLFSKSASPLAATRG----RSQEYDSGNDTSSPPSTQT :.: :: :.:.. :....::: gi|739 AETPRLLEGAEPGLEYAPLDEDDGPVDCDCPVACYRGHRGYRTQHW--GGSSASPPP--- 120 130 140 150 160 70 80 90 100 110 120 mKIAA1 SSARSRGQEKGSPGGDLSKSRDLNCGNTSDSGNSFTTSSPQNKGAVLETVSPACRSRESR ... ..::. . .: : :: .::: : ..:. :.: . gi|739 ---KKKKKKKGGHRRSRKKRR-------VDSECICGSSSPLRKKK--KSVKKHRRDRSDS 170 180 190 200 210 130 140 150 160 170 mKIAA1 GFQSPCLQCAEVKKSSLVPSTARSSPIKECSRSSSYTSTRSSSPSSRSPNPRASPRY--- : . . .. : :.. :. :: .:.. . :.: ::.: : :. gi|739 GSRR------KRRHRSRSPKSKRKEKNKERKRAKERPPR--ARPASTSPSPGAHGRHGGP 220 230 240 250 260 180 190 200 210 220 230 mKIAA1 ---TRSRSTSSEKRSYSRSPSYSSKSGKRSPPSRSSRSRRSPSYSRYSPSRERDLKYGEK . ::: . . :.: : : ::: .:: .:. :::: . . ::..: . . gi|739 EGKSSSRSPGPHPLSWSSSRS-PSKSRSRSAEKRTRSPSRSPS-PKKTLSRDKDSEGRAR 270 280 290 300 310 320 240 250 260 270 280 290 mKIAA1 EPQPRE-RARRRRRSYSPMRKRRRDSPSHLEARRITSARKRPIPYYRPSPSSSSSLSSAS . . . ::::: :::::.::::::::: .: ::::::::::::::::::::::: gi|739 HAEAEAARARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPSPSSSSS----- 330 340 350 360 370 380 300 310 320 330 340 350 mKIAA1 SWYSSSSSSSSSSSRSPSRSYSRSRSPSRSHSSRSQ-TRSRTRTSRSSSSRSLSLGSRSR ::. :::::::: : ..: . :.::::. ::::::. . : : : ::: gi|739 ------CLSSDYSSRSPSRSPSPGHSHG-SYSSRSRGTRSRTRSPSRTPSPSPSYHSRSS 390 400 410 420 430 360 370 mKIAA1 SRNRSLSYSSAESYASTRR :.. gi|739 SESGGF 440 >>gi|109495573|ref|XP_001065654.1| PREDICTED: hypothetic (498 aa) initn: 791 init1: 363 opt: 490 Z-score: 400.8 bits: 83.2 E(): 1.3e-13 Smith-Waterman score: 493; 36.188% identity (57.459% similar) in 362 aa overlap (3-356:166-495) 10 20 30 mKIAA1 VTGTRPRSSAVSDGSFCFQITGSGSAADLFSK :.: ::.: : ::: . .: gi|109 GRKTGSQRSSGSRSLSPSGGSGWGSPQQNGGSRQRSGA-HGGR-------PGSAHSPPDK 140 150 160 170 180 40 50 60 70 80 90 mKIAA1 SASPLAATRGRSQEYDS--GNDTSSPPSTQTSSARSRGQEKGSPGGDLSKSRDLNCGNTS .:: : .. . :.:..:: :. .:..:. :. . :: . : : gi|109 PSSPRACDKAAAAPTPPARGKDSQSPRSAPSSQGRG-GR---AAGGTARRRRRRRRRRRS 190 200 210 220 230 240 100 110 120 130 140 mKIAA1 DSGNSFTTSSPQNKGAV-LETVSPACRSRESRGFQSPCLQCAEVKKSSLVPSTARS--SP : ....:. .: . . : :: : .: . . . . :.. :. . gi|109 RS----SANAPRRRGRRRAKPAPPRGSSRSLSGAHSSSDSGGGAPGPGPEPGSERGHGGH 250 260 270 280 290 150 160 170 180 190 200 mKIAA1 IKECSRSSSYTSTRSSSPSSRSPNPRASPR-YTRSRSTSSEKRSYSRSPSYSSKSGKRSP :. .. . :.::: . . :..:. . ::: . . :.: : : ::: .::: gi|109 GKRAKERPPRARPASTSPSPGAHGRRGGPEGNSSSRSPGPHPGSWSSSRS-PSKSRSRSP 300 310 320 330 340 350 210 220 230 240 250 260 mKIAA1 PSRSSRSRRSPSYSRYSP-SRERDLKYGEKEPQPRE-RARRRRRSYSPMRKRRRDSPSHL .:. ::: .. : .:..: . .. . . :.::: :::::.::::::::: . gi|109 DKRTRSPSLSPSPKK--PLGRDKDSEGRARHAEAEAARTRRRSRSYSPIRKRRRDSPSFM 360 370 380 390 400 410 270 280 290 300 310 320 mKIAA1 EARRITSARKRPIPYYRPSPSSSSSLSSASSWYSSSSSSSSSSSRSPSRSYSRSRSPSRS : ::::::::::::::::::::::: : :. :: : ::::: ..:.. ::: gi|109 EPRRITSARKRPIPYYRPSPSSSSSCLS-------SDYSSRSRSRSPSPGHSHGSYSSRS 420 430 440 450 460 330 340 350 360 370 mKIAA1 HSSRSQTRSRTRTSRSSSSRSLSLGSRSRSRNRSLSYSSAESYASTRR :..:: :. .: ::: : ::: :.. gi|109 HGTRS------RSCSASRSRSPSYHSRSSSESGGF 470 480 490 >>gi|81873343|sp|Q80WV7.1|SRR2L_MOUSE RecName: Full=SRRM (648 aa) initn: 877 init1: 367 opt: 491 Z-score: 400.4 bits: 83.5 E(): 1.4e-13 Smith-Waterman score: 494; 36.685% identity (56.250% similar) in 368 aa overlap (3-356:316-645) 10 20 30 mKIAA1 VTGTRPRSSAVSDGSFCFQITGSGSAADLFSK :.: ::.: : ::: . .: gi|818 GRKTGSQRSSGSRSPSPSGGSGWGSPQQNGGSRQRSGA-HGGR-------PGSAHSPPDK 290 300 310 320 330 40 50 60 70 80 90 mKIAA1 SASPLAATRGRSQEYDS--GNDTSSPPSTQTSSARSRGQEKGSPGGDLSKSRDLNCGNTS .:: : .. . :.:..:: :. .:..:. :. . :: . : : gi|818 PSSPRACDKAAAAPTPPARGKDSQSPRSAPSSQGRG-GR---AAGGTARRRRRRRRRRRS 340 350 360 370 380 390 100 110 120 130 140 mKIAA1 DSGNSFTTSSPQNKGAV-LETVSPACRSRESRGFQSPCLQCAEVKKSSLVPSTARSSPIK : ....:. .: . . : :: : .: . . . . : . :. . gi|818 RS----SANAPRRRGRRRTKPAPPRGSSRSLSGAHSSSDSGGGAPGPGPEPCSERGHGGH 400 410 420 430 440 150 160 170 180 190 200 mKIAA1 ECSRSSSYTSTRSSSPSSRSPNPRASPRYTRSRSTSSEKRSYSRSPS--YSSKSGKRSPP .. .. :. :.: ::.: ::.: . : : ::::. .: :..::: gi|818 --GKRAKERPPRAR-PASTSPSPG-----TRGRRGGPEGNSSSRSPGPHQGSWSSSRSPS 450 460 470 480 490 500 210 220 230 240 250 mKIAA1 SRSSRS----RRSPSYSRYSPS----RERDLKYGEKEPQPRE-RARRRRRSYSPMRKRRR . ::: :::: : ::. :..: . .. . . :.::: :::::.::::: gi|818 KSHSRSPDKRTRSPSLSP-SPKKPLGRDKDSEGRARHAEAEAARTRRRSRSYSPIRKRRR 510 520 530 540 550 560 260 270 280 290 300 310 mKIAA1 DSPSHLEARRITSARKRPIPYYRPSPSSSSSLSSASSWYSSSSSSSSSSSRSPSRSYSRS :::: .: ::::::::::::::::::::::: : .. :: : ::::: ..:.. gi|818 DSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLS-------TDYSSRSHSRSPSPGHSHG 570 580 590 600 610 320 330 340 350 360 370 mKIAA1 RSPSRSHSSRSQTRSRTRTSRSSSSRSLSLGSRSRSRNRSLSYSSAESYASTRR ::::..:: :. .: ::: : ::: :.. gi|818 SYSSRSHGTRS------RSCSASRSRSPSYHSRSSSESGGF 620 630 640 >>gi|109497194|ref|XP_001077322.1| PREDICTED: similar to (676 aa) initn: 632 init1: 363 opt: 490 Z-score: 399.4 bits: 83.4 E(): 1.5e-13 Smith-Waterman score: 493; 36.188% identity (57.459% similar) in 362 aa overlap (3-356:344-673) 10 20 30 mKIAA1 VTGTRPRSSAVSDGSFCFQITGSGSAADLFSK :.: ::.: : ::: . .: gi|109 GRKTGSQRSSGSRSLSPSGGSGWGSPQQNGGSRQRSGA-HGGR-------PGSAHSPPDK 320 330 340 350 360 40 50 60 70 80 90 mKIAA1 SASPLAATRGRSQEYDS--GNDTSSPPSTQTSSARSRGQEKGSPGGDLSKSRDLNCGNTS .:: : .. . :.:..:: :. .:..:. :. . :: . : : gi|109 PSSPRACDKAAAAPTPPARGKDSQSPRSAPSSQGRG-GR---AAGGTARRRRRRRRRRRS 370 380 390 400 410 420 100 110 120 130 140 mKIAA1 DSGNSFTTSSPQNKGAV-LETVSPACRSRESRGFQSPCLQCAEVKKSSLVPSTARS--SP : ....:. .: . . : :: : .: . . . . :.. :. . gi|109 RS----SANAPRRRGRRRAKPAPPRGSSRSLSGAHSSSDSGGGAPGPGPEPGSERGHGGH 430 440 450 460 470 150 160 170 180 190 200 mKIAA1 IKECSRSSSYTSTRSSSPSSRSPNPRASPR-YTRSRSTSSEKRSYSRSPSYSSKSGKRSP :. .. . :.::: . . :..:. . ::: . . :.: : : ::: .::: gi|109 GKRAKERPPRARPASTSPSPGAHGRRGGPEGNSSSRSPGPHPGSWSSSRS-PSKSRSRSP 480 490 500 510 520 530 210 220 230 240 250 260 mKIAA1 PSRSSRSRRSPSYSRYSP-SRERDLKYGEKEPQPRE-RARRRRRSYSPMRKRRRDSPSHL .:. ::: .. : .:..: . .. . . :.::: :::::.::::::::: . gi|109 DKRTRSPSLSPSPKK--PLGRDKDSEGRARHAEAEAARTRRRSRSYSPIRKRRRDSPSFM 540 550 560 570 580 590 270 280 290 300 310 320 mKIAA1 EARRITSARKRPIPYYRPSPSSSSSLSSASSWYSSSSSSSSSSSRSPSRSYSRSRSPSRS : ::::::::::::::::::::::: : :. :: : ::::: ..:.. ::: gi|109 EPRRITSARKRPIPYYRPSPSSSSSCLS-------SDYSSRSRSRSPSPGHSHGSYSSRS 600 610 620 630 640 330 340 350 360 370 mKIAA1 HSSRSQTRSRTRTSRSSSSRSLSLGSRSRSRNRSLSYSSAESYASTRR :..:: :. .: ::: : ::: :.. gi|109 HGTRS------RSCSASRSRSPSYHSRSSSESGGF 650 660 670 >>gi|114614143|ref|XP_531037.2| PREDICTED: hypothetical (377 aa) initn: 689 init1: 362 opt: 486 Z-score: 399.0 bits: 82.5 E(): 1.6e-13 Smith-Waterman score: 503; 39.943% identity (57.224% similar) in 353 aa overlap (47-347:30-372) 20 30 40 50 60 70 mKIAA1 CFQITGSGSAADLFSKSASPLAATRGRSQEYDSGNDTSSPPSTQTSSARSRGQEKGSPGG ..:: . :: :: . . : ..::.: gi|114 METLSSPRRGLHGLIGFGQLWLVFTGWFRHQSGAICAFPPMRLTSWVYLHVQLSSSPAG 10 20 30 40 50 80 90 100 110 120 mKIAA1 DLSKSRDLNCGNTSD-----------SGNSFTTSSPQ--NKGAVLETVSPACRSRESRGF : . :::. ::.. .. ::. .:.:. . :: :..:: . gi|114 KGLDSTLPSAGNTQGHAKETVLLPVPSGKKPSSPSPRVRDKAAAAAPTPPA-RGKESPSP 60 70 80 90 100 110 130 140 150 160 170 mKIAA1 QS-PCLQCAEVKKSSLVPSTARSSPIKECSR--SSSYTSTRSSSPSSRSPNP-------- .: : : . .. . : .. :: ::: ... ...:. .:.: gi|114 RSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRARSSSDSGSGGGAPGP-GPEPGSERGHGG 120 130 140 150 160 170 180 190 200 210 220 mKIAA1 ---RASPRYTRSR--STSSEKRSYSRSPSYSSKSGKRSP-PS-RSSRSRRSPSYSR---- ::. : :.: ::: ...: . .::..::: : :: : :::: :: gi|114 HGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSA 180 190 200 210 220 230 230 240 250 260 mKIAA1 ----YSPSRE--------RDLKYGEKEPQPRE----RARRRRRSYSPMRKRRRDSPSHLE :::: :: : :: . . : ::::: :::::.::::::::: .: gi|114 EKRPRSPSRSPSPKKPLSRD-KDGEGRARHSEAEAARARRRSRSYSPIRKRRRDSPSFME 240 250 260 270 280 290 270 280 290 300 310 320 mKIAA1 ARRITSARKRPIPYYRPSPSSSSSLSSASSWYSSSSSSSSSSSRSPSRSYSRSRSPSRSH ::::::::::::::::::::::: : :. :. : ::::: ..:.. :::: gi|114 PRRITSARKRPIPYYRPSPSSSSSCLS-------SDYSTRSHSRSPSPGHSHGSYSSRSH 300 310 320 330 340 330 340 350 360 370 mKIAA1 SSRSQTRSRTRT-SRSSSSRSLSLGSRSRSRNRSLSYSSAESYASTRR ..::.::: .:: : : ::: : gi|114 GTRSRTRSPSRTPSPSYHSRSSSESGGF 350 360 370 372 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 03:47:01 2009 done: Mon Mar 16 03:53:11 2009 Total Scan time: 845.110 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]