FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1629.ptfa, 675 aa vs ./tmplib.26680 library 1768342 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 9.1478+/-0.00727; mu= -3.6855+/- 0.483 mean_var=314.4994+/-76.896, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.0723 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1441 ( 557 res) mpm02367 ( 557) 544 70 5e-13 mKIAA0211 ( 1292 res) mpm11220 (1292) 503 67 1.7e-11 >>mKIAA1441 ( 557 res) mpm02367 (557 aa) initn: 458 init1: 362 opt: 544 Z-score: 326.2 bits: 70.5 E(): 5e-13 Smith-Waterman score: 596; 36.939% identity (46.358% ungapped) in 379 aa overlap (306-675:33-343) 280 290 300 310 320 330 mKIAA1 SSEKSDSGIAAAASSKTKPSSKLSSCIAAIAALSAKKAASDSCKE-PVANSREASPLPKE :..: ..:. : :. : .: :::. mKIAA1 ALKQESCSPHHSQGLTQRGPGSSPETAGIPASVSPPQVAGVSFKQSPGHQSPPASPVK-- 10 20 30 40 50 60 340 350 360 370 380 390 mKIAA1 VNDSPKAADKSPESQNLIDGTKKASLKPSDSPRSVSS--ENSSKGSPSSPVGSTPAIP-K .:. . :... .: . : ::.: :: : ... : .::..:. . : : mKIAA1 ---APSCKPLKEEDEGTVDKS------PPRSPQSPSSGAEAADEDSNDSPTSSSSSRPLK 70 80 90 100 110 400 410 420 430 440 450 mKIAA1 VRIKTIKTSSGEIKRTVTRVLPEVDLDSGKKPSEQAASVMASVTSLLSSSASATVLSSPP ::::::::: :.: :::::: ::: .:: mKIAA1 VRIKTIKTSCGNITRTVTRV-----------PSEP----------------------DPP 120 130 460 470 480 490 500 510 mKIAA1 RAPLQTAMVTSAVSSAELTPKQVTIKPVATAFLPVSAVKTAGSQVINLKLANNTTVKATV ::: . . .: .:.: :: : : .:....:...: .:.:: mKIAA1 -APLAEGAFLAETSFLKLSP--VTPTP-------------EGPKVVSVQLGDGTRLKGTV 140 150 160 170 180 520 530 540 550 560 570 mKIAA1 ISAASVQSASSAIIKAANAIQQQTVVVPASSLANAKLVPKTVHLANLNLLPQGAQATSEL . .:..:.::.:.. ::. . ...::.:... .. : . :.: :.:.:: . .:. mKIAA1 LPVATIQNASTAMLMAAS-VARKAVVLPGGNATSPKTMTKSV----LGLVPQ-TLPKAEV 190 200 210 220 230 580 590 600 610 620 mKIAA1 RQVLTKPQQQIKQAIINAAASQPPKKVSRV-----QVVSSLQSSVVEAFNKVLSSVNPVP : .. :... : . . :: :... .:.: :::.::::::.:.: : .: mKIAA1 RTGFSLGGQKVNGASV--VMVQPSKSATGPGTAGGSVISRTQSSLVEAFNKILNSKNLLP 240 250 260 270 280 290 630 640 650 660 670 mKIAA1 VYTPNLSPPANAGITLPMRGYKCLECGDAFALEKSLSQHYDRRSVRIEV .: :::::::.::..:: ::.::::::::.:::::..::::::.:::: mKIAA1 AYRPNLSPPAEAGLALPPTGYRCLECGDAFSLEKSLARHYDRRSMRIEVTCNHCARRLVF 300 310 320 330 340 350 mKIAA1 FNKCSLLLHAREHKDKGLVMQCSHLVMRPVALDQMVGQPDITPLLPVAVPPVPGPLALPV 360 370 380 390 400 410 >>mKIAA0211 ( 1292 res) mpm11220 (1292 aa) initn: 981 init1: 399 opt: 503 Z-score: 298.8 bits: 66.6 E(): 1.7e-11 Smith-Waterman score: 1066; 38.439% identity (45.234% ungapped) in 679 aa overlap (35-675:31-645) 10 20 30 40 50 60 mKIAA1 NTTEGLTSLSVLIAGFFFPLPLTELIKFMTMGDMKTPDFDDLLAAFDIPD--MVDPKAAI :::::::::::::::::::: .: : :: mKIAA0 FFPSPQLCFPSNAHHTLVLRTSLSTCQHPAMGDMKTPDFDDLLAAFDIPDPTSLDAKEAI 10 20 30 40 50 60 70 80 90 100 110 mKIAA1 ESGHDDHESHIKQNAH-VDDD---SHTPSSSDV-GVSVIVKNVRNIDSSEGVEKDGHNPT .. ...:: .:... .:.. ::. :. :: .:::::::. .: :. ::: :. mKIAA0 QAPSEENESPLKSSGMCIDENVSLSHSGSAPDVPAVSVIVKNTSRQESFEA-EKDHIAPS 70 80 90 100 110 120 130 140 150 160 mKIAA1 GNGLHNGFLTASSL--DSY--GKDGAKSLKGDTPASEVTLKDPA-------FSQFSPISS ::::: .:.: ::. :: . ..::. : .. .:. :.::::::: mKIAA0 L--LHNGF-RGSDLPPDSHHCGKFDSTFINGDSARSFTSKLEPSKSEPLPTFNQFSPISS 120 130 140 150 160 170 170 180 190 200 210 220 mKIAA1 AEEFEDDEKIEVDDPPDKEEARAGFRSNVLTGSAPQQDFDKLKALGG---ENSSKTGVST : :: : :... :..:. . : ..:: : :: : mKIAA0 PEP-ED---------PVKDNGF-GIKSKHSDSYFPPPP----GTVGGPVLEALSKFPVPE 180 190 200 210 220 230 240 250 260 270 mKIAA1 SGHTDKNKVKREAESNSITLSVYEPFKV--RKAEDKLKE-NSEKML-ESRVLDGKPSS-- : . :.: . . . : . . .:. . :. .: ... :. ....::. mKIAA0 LHMFD-HFCKKEPKPEPLPLESQQEHEQGGQKVVEPHKDLDSSRFFGEALEFNSHPSNSI 230 240 250 260 270 280 280 290 300 310 320 mKIAA1 ---EKSDSGIAAAAS----SKTKPS-SKLSSCIAAIAALSAKKAASDSCKEPVANSREAS .: ..: .: .. ::. ::::::.::..::.::..:. . .. ......: mKIAA0 GEPKKLAPELSACSSVPPRQRLKPAHSKLSSCVAALVALQAKRVANVTKEDQPGHTKDSS 290 300 310 320 330 340 330 340 350 360 370 380 mKIAA1 -PLPKEVNDSPKAADKSPES-QNLIDGTKKASLKPSDSPRSVSSENSSKGSPSSPVGSTP : . . ::: :::.: .. ...:.: :.::::::::. :..::::::: ..: : mKIAA0 GPTKEGSKGSPKMP-KSPKSPRSPLEATRK-SIKPSDSPRSICSDSSSKGSPSVAASSPP 350 360 370 380 390 390 400 410 420 430 440 mKIAA1 AIPKVRIKTIKTSSGEIKRTVTRVLPEVDLDSGKKPSEQAASVMASVTSLLSSSASATVL :::::::::::::::::::::::.::. : : .:.:.:. :. ...: : . . mKIAA0 AIPKVRIKTIKTSSGEIKRTVTRILPDPD-DPSKSPAESPAG--STITEAPSEAPGDEGT 400 410 420 430 440 450 450 460 470 480 490 500 mKIAA1 SSPPRAPLQTAMVTSAVSSAELTPKQVTIKPVATAFLPVSAVKTAGSQVINLKLANNTTV . : . .. : . :. ... . :: .. : . .::.: mKIAA0 AMPVEEHFSEAGIHSGSPQGDRKGDENMIKTSDSS----SPCRISGSRV----------- 460 470 480 490 500 510 520 530 540 550 560 mKIAA1 KATVISAASVQSASSAIIKAANAIQQQTVVVPASSLANAKLVPKTVHLANLNLLPQGAQA .::. . :. ::.:. : .: :.:.::.::::::::.:... : mKIAA0 -----------PKGSALNSQASKKQQSTA--PQASTPAASLLPKAVHLANLNLVPHSVAA 510 520 530 540 570 580 590 600 610 620 mKIAA1 TSELRQ-VLTKPQQQIKQAIINAAASQPPKKVSRVQVVSSLQSSVVEAFNKVLSSVNPVP . .. . . : :. : . : : .:. .. : .::.::::: : :::: mKIAA0 SVTAKSSAQRRSQPQVTQMTV-------PL-VHQVKKAAPL---IVEVFNKVLHSSNPVP 550 560 570 580 590 630 640 650 660 670 mKIAA1 VYTPNLSPPANAGITLPMRGYKCLECGDAFALEKSLSQHYDRRSVRIEV .:.:::::::.. : .: :: ::::::::::::::::::.::::.::: mKIAA0 LYAPNLSPPADSRIHVPASGYCCLECGDAFALEKSLSQHYSRRSVHIEVLCTLCSKTLFF 600 610 620 630 640 650 mKIAA0 FNKCSLLRHARDHKSKGLVMQCSQLLVKPISADQMFVAAPVNSTAPATPAASSSPKPSPT 660 670 680 690 700 710 675 residues in 1 query sequences 1768342 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:49:58 2006 done: Mon Mar 27 10:49:59 2006 Scan time: 0.870 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]