FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4045.ptfa, 724 aa vs ./tmplib.26680 library 1768293 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.7409+/-0.00523; mu= 7.4399+/- 0.349 mean_var=127.2536+/-29.665, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1137 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0285 ( 567 res) mbg06059 ( 567) 212 46 1.2e-05 >>mKIAA0285 ( 567 res) mbg06059 (567 aa) initn: 547 init1: 153 opt: 212 Z-score: 193.4 bits: 46.0 E(): 1.2e-05 Smith-Waterman score: 492; 27.046% identity (38.310% ungapped) in 721 aa overlap (35-719:19-563) 10 20 30 40 50 60 mKIAA4 QLRAPCGHGCWGKSGRARRVCAVSMGSWLSEVQWLFLVSLFVAALGTVGLYLAQWA---- .: : :. ::.:.: :: .. :.: mKIAA0 TRAGTRARGSMDPDWGQRDVGWAALLVLFAASLITVLGWMLQYARGLW 10 20 30 40 70 80 90 mKIAA4 LAKA---RPP-PRRRAEP-----------DELRRRESDT----------LLSWILTRDSW :..: : : ::: . :: : . : ::. ... :. mKIAA0 LSRADGGRDSRPASAAEPGGSLRELGVWRSLLRLRATRTSTPEEAGVRGLLASLFAFKSF 50 60 70 80 90 100 100 110 120 130 140 150 mKIAA4 GNQWQAAWVTALNYEAEKRGGPLRLSFQKDPR--PQSLQLTVEKVSSVVKSTQEKVVICH ..:: ::: ::: .: . :. ....:.. :. :.. .. .:. : .: . :. :. mKIAA0 RENWQRAWVRALNEQACRDGSSIQIAFEEIPQLPPRA---SISHVTCVDQSERTMVLHCQ 110 120 130 140 150 160 160 170 180 190 200 210 mKIAA4 VVGETLQFLVSAGPASATGSECQLYDVHLSPFHLKVEFHMEE-KREDIQIRWSFTHVPET . .: ..: .:. : .. . : : :. ..: .:: : . . :.:: :: mKIAA0 LSAEEVRFPISVTQQSPAAVSMETYHVTLTLPPTQLEVSLEEIPDEGLLVSWAFTDRPEL 170 180 190 200 210 220 220 230 240 250 260 270 mKIAA4 AIKIQPQAPGEKKALGVNMLSEALEDLFKHLVNAASPSVFLSTKPTQVKEAQSLQCPSST ..:. :. ... :: ..:.:.: . ...:..... . : . mKIAA0 SLKVLPKLQTRERDEEQPELS-TVEELIKDAIVSTQPAMMVNLRA----------CSA-- 230 240 250 260 270 280 290 300 310 320 330 mKIAA4 AQEPCPPKPPRAHELKLQVKNIRVSLINHPGASGLSHVCVAQLNDPEQRFISTLVRNTTD ::. mKIAA0 -----------------------------PGG---------------------------- 340 350 360 370 380 390 mKIAA4 LSWEEEFTFELNAKSKELVLQISQDGCSSEGLLGIATIHLDLFRKQPNGPQTFRLISGTE ::: . ..:: . .: . ..:... :: mKIAA0 -----------------LVL-------TPRSLLTLWQLHYE-----QGSPRNL----GT- 280 290 300 400 410 420 430 440 450 mKIAA4 PDSLVLGSVTAEFSYVEPGELKSWPAPPPVSAAKIEKDRTVMPCGTVVTTVTAVKTKPRF : : : : : . . ::: :::.:: ::::::::.:...:: mKIAA0 PTS-------------------STPRPSITPTKKIELDRTIMPDGTVVTTVTTVQSRPRV 310 320 330 340 460 470 480 490 500 510 mKIAA4 DTGRATPLNSESPVRTPVTVKVIEKDISVQAISCHSAPVSKTFSSSDTELLVLNGSDPVA : :. :.. . . : :.... : :: :::: mKIAA0 D-GK---LSGATDLLYP--------------------PAGESHLS--------NGLDPVA 350 360 370 520 530 540 550 560 570 mKIAA4 EVAIRQLSE-SSKLKLKSPRKKSTIIISGISKTSLSQDHNAALMLDYAASMDSTNQGDAT :.:::::.: :.. :.: :.::.::::.::. ..::. :: : ::::.... : :: mKIAA0 ETAIRQLTEPSGRAAKKTPTKRSTLIISGVSKVPIAQDE-LALSLGYAASLEASMQDDA- 380 390 400 410 420 580 590 600 610 620 630 mKIAA4 SALCHPEATEASATTPPEENEPAQTLPALKPRENDLDSWELEKESPVASWSGPALQEPDG .: .. ..:: ..:. : :. : . :.: .:. .. : . ..:. mKIAA0 -------GTSGGPSSPP--SDPSATSPG--PVDA-LSSPTSVQEADETTRSDIS-ERPSV 430 440 450 460 470 640 650 660 670 680 mKIAA4 DELSESSLSTS--ELGAMKKHKGGLLRKGAKLFFRRRHQQKDPGLSQSHNDLV-FLQQPE :.. . ::. : ..: :: ..::.:.::.:::: .::. ::::::.:: : mKIAA0 DDVESETGSTGALETRSLKDHKVSFLRSGTKLIFRRRPRQKEAGLSQSHDDLSNTTATPS 480 490 500 510 520 530 690 700 710 720 mKIAA4 GRQKKGATLGRLLNRKLLTRHRGKHTMNGVPREPCI :.: :. ::..: ..: :: : mKIAA0 VRKKAGSFSRRLIKR---FSFKSKPKANGNPSPQL 540 550 560 724 residues in 1 query sequences 1768293 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:00:08 2006 done: Mon Mar 27 11:00:09 2006 Scan time: 0.930 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]