FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1180.ptfa, 490 aa
 vs ./tmplib.26680 library

1768527 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.3546+/-0.00483; mu= 13.0915+/- 0.324
 mean_var=106.4716+/-24.579, 0's: 0 Z-trim: 2  B-trim: 20 in 1/35
 Lambda= 0.1243

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1248  ( 308 res)   mtk02549                   ( 308) 1239  232 3.7e-62


>>mKIAA1248  ( 308 res)   mtk02549                        (308 aa)
 initn: 1251 init1: 825 opt: 1239  Z-score: 1208.3  bits: 232.4 E(): 3.7e-62
Smith-Waterman score: 1334;  62.154% identity (66.447% ungapped) in 325 aa overlap (170-490:1-308)

     140       150       160       170       180       190         
mKIAA1 VDTDWKEHDIETPYGLLHVVIRGSPKGNRPAILTYHDVGLNHKLCFNTFFNFEDMQEITK
                                     ::.::::::::.: ::. .: : ::::: .
mKIAA1                               AIFTYHDVGLNYKSCFQPLFRFGDMQEIIQ
                                             10        20        30

     200       210       220       230       240       250         
mKIAA1 HFVVCHVDAPGQQVGASQFPQGYQFPSMEQLAAMLPSVVQHFGFKYVIGIGVGAGAYVLA
       .::  ::::::.. ::  :: :::.::..::: :.: ..:...:. .::.:::::::.:.
mKIAA1 NFVRVHVDAPGMEEGAPVFPLGYQYPSLDQLADMIPCILQYLNFSTIIGVGVGAGAYILS
               40        50        60        70        80        90

     260       270       280       290       300       310         
mKIAA1 KFALIFPDLVEGLVLMNIDPNGKGWIDWAATKLSGLTSTLPDTVLSHLFSQEELVNNTEL
       ..::  :: ::::::.:::::.:::.:::: ::.::::..:: .:.:::::::: .:.::
mKIAA1 RYALNHPDTVEGLVLINIDPNAKGWMDWAAHKLTGLTSSIPDMILGHLFSQEELSGNSEL
              100       110       120       130       140       150

     320       330       340       350       360       370         
mKIAA1 VQSYRQQISNVVNQANLQLFWNMYNSRRDLDINRPGTVPNAKTLRCPVMLVVGDNAPAEE
       .:.::  :... :  :..:.:: ::.::::...: : .    ::.:::::::::.:: :.
mKIAA1 IQKYRGIIQHAPNLENIELYWNSYNNRRDLNFERGGET----TLKCPVMLVVGDQAPHED
              160       170       180           190       200      

     380       390       400       410       420       430         
mKIAA1 GVVECNSKLDPTTTTFLKMADSGGLPQVTQPGKLTEAFKYFLQGMGYIAHLKDRRLSGGA
       .::::::::::: :.::::::::: ::.:::::::::::::::::::.:           
mKIAA1 AVVECNSKLDPTQTSFLKMADSGGQPQLTQPGKLTEAFKYFLQGMGYMA-----------
        210       220       230       240       250                

     440       450       460       470           480       490
mKIAA1 VPSASMTRLARSRTASLTSASSVDGSRPQPCAHSDSSEG----MGQVNHTMEVSC
         :. ::::.::::::::::.:.:::: .  . :.:::.     :  .:::::::
mKIAA1 --SSCMTRLSRSRTASLTSAASIDGSRSRSRTLSQSSESGTLPSGPPGHTMEVSC
           260       270       280       290       300        




490 residues in 1 query   sequences
1768527 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:37:53 2006 done: Mon Mar 27 10:37:54 2006
 Scan time:  0.680 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]