FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA3015.ptfa, 858 aa
 vs ./tmplib.26680 library

1768159 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 12.3773+/-0.00941; mu= -16.8967+/- 0.624
 mean_var=533.2630+/-128.986, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0555

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1151  ( 1906 res)   mbf00011                  (1906)  448   51 1.3e-06


>>mKIAA1151  ( 1906 res)   mbf00011                       (1906 aa)
 initn: 487 init1: 198 opt: 448  Z-score: 210.8  bits: 51.2 E(): 1.3e-06
Smith-Waterman score: 491;  27.758% identity (32.704% ungapped) in 562 aa overlap (284-818:1-504)

           260       270       280       290       300       310   
mKIAA3 HPGMSENVPAPLENSPSVPVNCSSSAIPQPSMTSKPWRSKSLSVKHTATSAMLSVKPAGP
                                     : ::.:  :   :.. .:: ...: . : :
mKIAA1                               SGTSSPVCSPVQSMRSSATPGVISFSSAHP
                                             10        20        30

           320       330       340          350       360       370
mKIAA3 EAPRPTPEAMKPAPNNQKSMLEKLKLFNSK---GGSKAGEGSASRDTSCERLEILPSFEE
       .. .:   .. :     ..  :   . . .    :  .  . .  . ::   .:. ..  
mKIAA1 QS-QPITATVAPFQYRLQTDQEPGPVPQESWVLDGYTSPPSRTEDSFSCMDARIVHALLA
                40        50        60        70        80         

              380           390         400          410       420 
mKIAA3 TEELEATANRALSTV----GPASSSPKIA--LKGIAQRTFS---RALTNKKSSPKGNEKE
        . : .... .   :    : .:.. . :   .: .... .   :..  :...  :.   
mKIAA1 GRMLGSSVKSVQPEVELSGGSGSGGDEGADESRGASRKAAAADGRGMLPKRAKAAGGSGS
      90       100       110       120       130       140         

             430                 440       450        460          
mKIAA3 KEKQQREKEK-------EKEKEKG---KDLTKRVSVTDRPDLKE-ETKADLSGVAVTE-M
         : .  . :       ...   :   ..: :. :.:.   : . : : .:     .. :
mKIAA1 MAKASAAELKVFKSGSVDSRVPGGLPTSNLRKQKSLTNLSFLTDSEKKLQLYEPEWSDDM
     150       160       170       180       190       200         

     470       480       490       500       510       520         
mKIAA3 PKKSSKIASFIPKGGKLNSTKKEATAPSHSGIPKPGMKNVSAKSPSAPIPPKEGERSRGK
        :  . .... ::: .    .:  .   :: .   : .. .::.: ::. :. :. ::  
mKIAA1 AKAPKGLGKLGPKGRETPLMSKTLSKSEHSLFQPKGGSTGGAKTPLAPLAPSLGKPSR--
     210       220       230       240       250       260         

     530       540       550       560       570       580         
mKIAA3 LSSGLPPQKAQLDSRHSSSSSSLASSEGKGPGGTSLNPSISSQTVSGSVGTTQTTGSNTV
             :.    . .  :..   : :.     : : .  .::.. . .       ::.::
mKIAA1 -----IPRGPYAEVKPLSKAPEAAVSDD----GKSDDELLSSKAKAQK-------GSGTV
            270       280       290           300              310 

     590       600       610       620       630       640         
mKIAA3 SVQLPQPQQQYNHPNTATVAPFLYRSQTDTEGNVTAESSSAGVSMEPSHYTKSGQPALEE
           :. . : ..        ::   ..: :  ::. ..     .:   ...        
mKIAA1 ----PSAKGQEERA-------FL---KVDPELVVTVLGD-----LEQLLFSQ--------
                 320                 330            340            

     650       660       670       680       690        700        
mKIAA3 LTEDPEARRLRTVKNIADLRQNLEETMSSLRGTQVTHSTLETT-FDTNVTTEISGRSILS
          :::..: :::.:. :::::::::::::::.:::::.::   .:..   . . ::. :
mKIAA1 -MLDPESQRKRTVQNVLDLRQNLEETMSSLRGSQVTHSSLEMPCYDSD---DANPRSVSS
           350       360       370       380       390          400

      710       720       730       740       750       760        
mKIAA3 LTGRPTPLSWRLGQSSPRLQAGDAPSMGNGYPPRANASRFISAEAGRYVYSAPLRRQLAS
       ...: .::::: ::::::::::::::.:..   ..  . .. .: ..: .. :.:    :
mKIAA1 FSNRSSPLSWRYGQSSPRLQAGDAPSVGGSCRSEGPPAWYMHGERAHYSHTMPMRSP--S
              410       420       430       440       450          

      770       780        790       800        810       820      
mKIAA3 RGSSICHVDVSDKAD-DDVDLEGISMDAPGYMSDGDVLSKNI-RSDDITSGYMTDGGLGL
       . : : .... .. : :.:::..      :::::.:...:.. ..::::.:.        
mKIAA1 KLSHISRLELVESLDSDEVDLKS------GYMSDSDLMGKTMTEDDDITTGWDESSSISS
      460       470       480             490       500       510  

        830       840       850                                    
mKIAA3 YTRRLNRLPDGMAVVRETLQRNTSLGLGDADR                            
                                                                   
mKIAA1 GLSDASDNLSSEEFNASSSLNSLPTTPTASRRSSTIVLRTDSEKRSLAESGLNWFSESEE
            520       530       540       550       560       570  




858 residues in 1 query   sequences
1768159 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:58:35 2006 done: Mon Mar 27 10:58:36 2006
 Scan time:  1.000 Display time:  0.070

Function used was FASTA [version 3.4t11 Apr 17, 2002]