# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbg12853.fasta.nr -Q ../query/mKIAA3021.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA3021, 756 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920664 sequences Expectation_n fit: rho(ln(x))= 5.3275+/-0.000183; mu= 12.3641+/- 0.010 mean_var=74.9500+/-14.709, 0's: 40 Z-trim: 45 B-trim: 0 in 0/64 Lambda= 0.148145 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|118574242|sp|Q8BX70.2|VP13C_MOUSE RecName: Full (3748) 4932 1064.4 0 gi|109483673|ref|XP_343419.3| PREDICTED: similar t (3574) 4835 1043.6 0 gi|119598012|gb|EAW77606.1| vacuolar protein sorti (3585) 4667 1007.7 0 gi|119598009|gb|EAW77603.1| vacuolar protein sorti (3597) 4667 1007.7 0 gi|119598011|gb|EAW77605.1| vacuolar protein sorti (3628) 4667 1007.7 0 gi|114657348|ref|XP_510458.2| PREDICTED: vacuolar (3836) 4662 1006.7 0 gi|42454406|emb|CAF25187.1| VPS13C-1B protein [Hom (3585) 4661 1006.4 0 gi|42454408|emb|CAF25188.1| VPS13C-2B protein [Hom (3628) 4661 1006.4 0 gi|55726320|emb|CAH89931.1| hypothetical protein [ (1573) 4654 1004.7 0 gi|74000345|ref|XP_864651.1| PREDICTED: similar to (3586) 4647 1003.4 0 gi|74000341|ref|XP_851912.1| PREDICTED: similar to (3629) 4647 1003.4 0 gi|119598005|gb|EAW77599.1| vacuolar protein sorti (3679) 4645 1003.0 0 gi|119598007|gb|EAW77601.1| vacuolar protein sorti (3710) 4645 1003.0 0 gi|119598008|gb|EAW77602.1| vacuolar protein sorti (3722) 4645 1003.0 0 gi|119598013|gb|EAW77607.1| vacuolar protein sorti (3753) 4645 1003.0 0 gi|42406425|emb|CAE75582.1| VPS13C-1A protein [Hom (3710) 4639 1001.7 0 gi|74712594|sp|Q709C8.1|VP13C_HUMAN RecName: Full= (3753) 4639 1001.7 0 gi|74000343|ref|XP_864640.1| PREDICTED: similar to (3599) 4628 999.4 0 gi|194206590|ref|XP_001918170.1| PREDICTED: simila (4053) 4596 992.6 0 gi|149410857|ref|XP_001511058.1| PREDICTED: simila (3801) 4454 962.2 0 gi|119902488|ref|XP_001251892.1| PREDICTED: vacuol (3710) 4350 940.0 0 gi|119902486|ref|XP_001251844.1| PREDICTED: vacuol (3753) 4350 940.0 0 gi|224062293|ref|XP_002194061.1| PREDICTED: vacuol (3733) 4197 907.3 0 gi|118095642|ref|XP_001233000.1| PREDICTED: vacuol (3758) 4146 896.4 0 gi|34536131|dbj|BAC87549.1| unnamed protein produc (1662) 3864 835.9 0 gi|189521486|ref|XP_001922767.1| PREDICTED: simila (3699) 3689 798.7 0 gi|74183002|dbj|BAE20465.1| unnamed protein produc ( 674) 3548 768.0 0 gi|194385732|dbj|BAG65241.1| unnamed protein produ ( 674) 3366 729.1 1.3e-207 gi|148694211|gb|EDL26158.1| mCG127833 [Mus musculu (3217) 3010 653.5 3.6e-184 gi|193784819|dbj|BAG53972.1| unnamed protein produ ( 585) 2873 623.7 6.1e-176 gi|224090857|ref|XP_002187102.1| PREDICTED: simila (3176) 2616 569.3 7.9e-159 gi|73946751|ref|XP_533522.2| PREDICTED: similar to (3194) 2537 552.4 9.6e-154 gi|149635322|ref|XP_001511611.1| PREDICTED: simila (3012) 2514 547.5 2.8e-152 gi|114625099|ref|XP_520084.2| PREDICTED: vacuolar (3094) 2502 544.9 1.7e-151 gi|194669382|ref|XP_001787725.1| PREDICTED: simila (1560) 2498 543.9 1.8e-151 gi|114625101|ref|XP_001147843.1| PREDICTED: vacuol (3069) 2500 544.5 2.2e-151 gi|114625097|ref|XP_001148476.1| PREDICTED: vacuol (3135) 2500 544.5 2.3e-151 gi|114625095|ref|XP_001148547.1| PREDICTED: vacuol (3174) 2500 544.5 2.3e-151 gi|27697156|gb|AAH41852.1| VPS13A protein [Homo sa (1246) 2495 543.2 2.3e-151 gi|14289183|dbj|BAB59128.1| chorein [Homo sapiens] (3095) 2498 544.1 3e-151 gi|42454404|emb|CAF25186.1| chorein 1D [Homo sapie (3069) 2496 543.7 4e-151 gi|42406423|emb|CAE75581.1| chorein 2A [Homo sapie (3135) 2496 543.7 4.1e-151 gi|14388939|gb|AAK61861.1|AF337532_1 chorea-acanth (3174) 2496 543.7 4.1e-151 gi|71152975|sp|Q96RL7.2|VP13A_HUMAN RecName: Full= (3174) 2496 543.7 4.1e-151 gi|10434665|dbj|BAB14337.1| unnamed protein produc ( 975) 2489 541.8 4.6e-151 gi|219275534|ref|NP_001094445.2| vacuolar protein (3167) 2473 538.8 1.2e-149 gi|38566098|gb|AAH62130.1| Vps13a protein [Mus mus (1186) 2445 532.5 3.6e-148 gi|81888996|sp|Q5H8C4.1|VP13A_MOUSE RecName: Full= (3166) 2445 532.8 7.9e-148 gi|26325584|dbj|BAC26546.1| unnamed protein produc ( 921) 2437 530.7 9.8e-148 gi|194224739|ref|XP_001916904.1| PREDICTED: vacuol (3126) 2347 511.8 1.6e-141 >>gi|118574242|sp|Q8BX70.2|VP13C_MOUSE RecName: Full=Vac (3748 aa) initn: 4983 init1: 4931 opt: 4932 Z-score: 5682.0 bits: 1064.4 E(): 0 Smith-Waterman score: 4932; 99.073% identity (99.470% similar) in 755 aa overlap (2-756:2869-3623) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS :::::::::::::::::::::::::::::: gi|118 ATNMEYLVGVSIKMSSFNLSRVVTLTPFCTVANKSSLDLEVGEIASDGSIPTNKWHYVAS 2840 2850 2860 2870 2880 2890 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|118 SECIPFWPENLSGKLCVRVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST 2900 2910 2920 2930 2940 2950 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN 2960 2970 2980 2990 3000 3010 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 3020 3030 3040 3050 3060 3070 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS 3080 3090 3100 3110 3120 3130 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR 3140 3150 3160 3170 3180 3190 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3200 3210 3220 3230 3240 3250 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS 3260 3270 3280 3290 3300 3310 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA 3320 3330 3340 3350 3360 3370 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3380 3390 3400 3410 3420 3430 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3440 3450 3460 3470 3480 3490 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3500 3510 3520 3530 3540 3550 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.. gi|118 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLENH 3560 3570 3580 3590 3600 3610 mKIAA3 MGTQE . : gi|118 IKKLEGEAYQFHCAVPGNKRAVLMITNRRALFIKEVEILGHMSVDWQCLFEDFVCPPEVS 3620 3630 3640 3650 3660 3670 >>gi|109483673|ref|XP_343419.3| PREDICTED: similar to va (3574 aa) initn: 4887 init1: 4834 opt: 4835 Z-score: 5570.2 bits: 1043.6 E(): 0 Smith-Waterman score: 4835; 96.424% identity (98.808% similar) in 755 aa overlap (2-756:2702-3456) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS :::::::.:::::::::::::::::::.:: gi|109 ATTMEYLVGVSIKMSSFNLSRIVTLTPFCTVANKSSLELEVGEIASDGSIPTNKWHYIAS 2680 2690 2700 2710 2720 2730 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|109 SECIPFWPENLSGKLCVRVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST 2740 2750 2760 2770 2780 2790 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN ::::::::::::::::::::::.::::::::::: :::::::::::::::::: :::::. gi|109 VITFSDYHEGSAPALIMNHTQWNVLTYKQSGSQEALVLLPGETRLFAWADPTGTRKLTWS 2800 2810 2820 2830 2840 2850 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 2860 2870 2880 2890 2900 2910 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS : ::::::::::::::::::::::::::.:::::::::::::::::::::::: :::.:. gi|109 DLEVALSLHSLGLSLVNNENKQEVSYVGVTSSGVVWEMKPKQKWKPFSQKQIMLLEQSYQ 2920 2930 2940 2950 2960 2970 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :.:.::::::.::::::::::::::::::::.:::::::::::::::::::::::::::: gi|109 KHLTSQDRGWIKLDSNFEVNFDKVPMEMRLPLRCPIKRDFLSGIQVEFKQSPHQRSLRAR 2980 2990 3000 3010 3020 3030 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3040 3050 3060 3070 3080 3090 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::::::::::::.:::::.:::::::::::::::::::::::.::::.:::::: gi|109 LIQEMALKVDQGFLGAVIALFTPTSDPEAERKRTKLIQQDIDALNTELLESSMSDMSILS 3100 3110 3120 3130 3140 3150 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA 3160 3170 3180 3190 3200 3210 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3220 3230 3240 3250 3260 3270 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|109 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3280 3290 3300 3310 3320 3330 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3340 3350 3360 3370 3380 3390 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.. gi|109 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLENQ 3400 3410 3420 3430 3440 3450 mKIAA3 MGTQE . : gi|109 IKKLEGEAYQFHCTVPGNKRAVLMITNRRVLFIKEVEILGHMSVDWQCLFEDFLCPPGVS 3460 3470 3480 3490 3500 3510 >>gi|119598012|gb|EAW77606.1| vacuolar protein sorting 1 (3585 aa) initn: 4667 init1: 4667 opt: 4667 Z-score: 5376.1 bits: 1007.7 E(): 0 Smith-Waterman score: 4667; 92.053% identity (97.748% similar) in 755 aa overlap (2-756:2831-3585) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS .::::::.:::::::::::.:::::.:.:: gi|119 ANNMEYLVGVSIKMSSFNLSRIVTLTPFCTIANKSSLELEVGEIASDGSMPTNKWNYIAS 2810 2820 2830 2840 2850 2860 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST :::.::::::::::::: ::: ::::::::::::::::::::::::::::::.::::::: gi|119 SECLPFWPENLSGKLCVRVVGCEGSSKPFFYNRQDNGTLLSLEDLNGGILVDVNTAEHST 2870 2880 2890 2900 2910 2920 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::::::: ::.:::::::: ::.:::: ..:::::::::: :::::. gi|119 VITFSDYHEGSAPALIMNHTPWDILTYKQSGSPEEMVLLPRQARLFAWADPTGTRKLTWT 2930 2940 2950 2960 2970 2980 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::: :::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|119 YAANVGEHDLLKDGCGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 2990 3000 3010 3020 3030 3040 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :.:..::::::::::::::.::::::.::::::::::.::::::::::::::. :::.:. gi|119 DYEITLSLHSLGLSLVNNESKQEVSYIGITSSGVVWEVKPKQKWKPFSQKQIILLEQSYQ 3050 3060 3070 3080 3090 3100 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :. :.:.::.:::.:::::::: ::::::::: :::::::::::.::::: :::::::: gi|119 KHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRSPIKRDFLSGIQIEFKQSSHQRSLRAR 3110 3120 3130 3140 3150 3160 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LYWLQVDNQLPGAMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3170 3180 3190 3200 3210 3220 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::.:::::::.:.::::::::::::.:::::::::::::.::::.::::::::: gi|119 LIQEMALKIDQGFLGAIIALFTPTTDPEAERRRTKLIQQDIDALNAELMETSMTDMSILS 3230 3240 3250 3260 3270 3280 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA ::::::::::::::::::::::::::::::::.:.::::::::::::::::::::::::: gi|119 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMFAVHSVNLLLKSIGATLTDVDDLIFKLA 3290 3300 3310 3320 3330 3340 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|119 YYEIRYQFYKRDQLIWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3350 3360 3370 3380 3390 3400 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|119 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3410 3420 3430 3440 3450 3460 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV ::..:::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3470 3480 3490 3500 3510 3520 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE :::::::.::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|119 ARPTGGIVDMASSTFQGIQRAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE 3530 3540 3550 3560 3570 3580 mKIAA3 MGTQE . :: gi|119 LEIQE >>gi|119598009|gb|EAW77603.1| vacuolar protein sorting 1 (3597 aa) initn: 4667 init1: 4667 opt: 4667 Z-score: 5376.1 bits: 1007.7 E(): 0 Smith-Waterman score: 4667; 92.053% identity (97.748% similar) in 755 aa overlap (2-756:2843-3597) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS .::::::.:::::::::::.:::::.:.:: gi|119 ANNMEYLVGVSIKMSSFNLSRIVTLTPFCTIANKSSLELEVGEIASDGSMPTNKWNYIAS 2820 2830 2840 2850 2860 2870 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST :::.::::::::::::: ::: ::::::::::::::::::::::::::::::.::::::: gi|119 SECLPFWPENLSGKLCVRVVGCEGSSKPFFYNRQDNGTLLSLEDLNGGILVDVNTAEHST 2880 2890 2900 2910 2920 2930 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::::::: ::.:::::::: ::.:::: ..:::::::::: :::::. gi|119 VITFSDYHEGSAPALIMNHTPWDILTYKQSGSPEEMVLLPRQARLFAWADPTGTRKLTWT 2940 2950 2960 2970 2980 2990 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::: :::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|119 YAANVGEHDLLKDGCGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 3000 3010 3020 3030 3040 3050 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :.:..::::::::::::::.::::::.::::::::::.::::::::::::::. :::.:. gi|119 DYEITLSLHSLGLSLVNNESKQEVSYIGITSSGVVWEVKPKQKWKPFSQKQIILLEQSYQ 3060 3070 3080 3090 3100 3110 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :. :.:.::.:::.:::::::: ::::::::: :::::::::::.::::: :::::::: gi|119 KHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRSPIKRDFLSGIQIEFKQSSHQRSLRAR 3120 3130 3140 3150 3160 3170 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LYWLQVDNQLPGAMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3180 3190 3200 3210 3220 3230 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::.:::::::.:.::::::::::::.:::::::::::::.::::.::::::::: gi|119 LIQEMALKIDQGFLGAIIALFTPTTDPEAERRRTKLIQQDIDALNAELMETSMTDMSILS 3240 3250 3260 3270 3280 3290 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA ::::::::::::::::::::::::::::::::.:.::::::::::::::::::::::::: gi|119 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMFAVHSVNLLLKSIGATLTDVDDLIFKLA 3300 3310 3320 3330 3340 3350 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|119 YYEIRYQFYKRDQLIWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3360 3370 3380 3390 3400 3410 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|119 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3420 3430 3440 3450 3460 3470 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV ::..:::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3480 3490 3500 3510 3520 3530 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE :::::::.::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|119 ARPTGGIVDMASSTFQGIQRAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE 3540 3550 3560 3570 3580 3590 mKIAA3 MGTQE . :: gi|119 LEIQE >>gi|119598011|gb|EAW77605.1| vacuolar protein sorting 1 (3628 aa) initn: 4667 init1: 4667 opt: 4667 Z-score: 5376.1 bits: 1007.7 E(): 0 Smith-Waterman score: 4667; 92.053% identity (97.748% similar) in 755 aa overlap (2-756:2874-3628) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS .::::::.:::::::::::.:::::.:.:: gi|119 ANNMEYLVGVSIKMSSFNLSRIVTLTPFCTIANKSSLELEVGEIASDGSMPTNKWNYIAS 2850 2860 2870 2880 2890 2900 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST :::.::::::::::::: ::: ::::::::::::::::::::::::::::::.::::::: gi|119 SECLPFWPENLSGKLCVRVVGCEGSSKPFFYNRQDNGTLLSLEDLNGGILVDVNTAEHST 2910 2920 2930 2940 2950 2960 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::::::: ::.:::::::: ::.:::: ..:::::::::: :::::. gi|119 VITFSDYHEGSAPALIMNHTPWDILTYKQSGSPEEMVLLPRQARLFAWADPTGTRKLTWT 2970 2980 2990 3000 3010 3020 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::: :::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|119 YAANVGEHDLLKDGCGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 3030 3040 3050 3060 3070 3080 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :.:..::::::::::::::.::::::.::::::::::.::::::::::::::. :::.:. gi|119 DYEITLSLHSLGLSLVNNESKQEVSYIGITSSGVVWEVKPKQKWKPFSQKQIILLEQSYQ 3090 3100 3110 3120 3130 3140 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :. :.:.::.:::.:::::::: ::::::::: :::::::::::.::::: :::::::: gi|119 KHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRSPIKRDFLSGIQIEFKQSSHQRSLRAR 3150 3160 3170 3180 3190 3200 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LYWLQVDNQLPGAMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3210 3220 3230 3240 3250 3260 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::.:::::::.:.::::::::::::.:::::::::::::.::::.::::::::: gi|119 LIQEMALKIDQGFLGAIIALFTPTTDPEAERRRTKLIQQDIDALNAELMETSMTDMSILS 3270 3280 3290 3300 3310 3320 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA ::::::::::::::::::::::::::::::::.:.::::::::::::::::::::::::: gi|119 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMFAVHSVNLLLKSIGATLTDVDDLIFKLA 3330 3340 3350 3360 3370 3380 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|119 YYEIRYQFYKRDQLIWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3390 3400 3410 3420 3430 3440 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|119 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3450 3460 3470 3480 3490 3500 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV ::..:::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3510 3520 3530 3540 3550 3560 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE :::::::.::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|119 ARPTGGIVDMASSTFQGIQRAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE 3570 3580 3590 3600 3610 3620 mKIAA3 MGTQE . :: gi|119 LEIQE >>gi|114657348|ref|XP_510458.2| PREDICTED: vacuolar prot (3836 aa) initn: 4738 init1: 4657 opt: 4662 Z-score: 5369.9 bits: 1006.7 E(): 0 Smith-Waterman score: 4662; 91.921% identity (97.748% similar) in 755 aa overlap (2-756:2957-3711) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS .::::::.:::::::::::.:::::.:.:: gi|114 ANNMEYLVGVSIKMSSFNLSRIVTLTPFCTIANKSSLELEVGEIASDGSMPTNKWNYIAS 2930 2940 2950 2960 2970 2980 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST :::.::::::::::::: ::: ::::::::::::::::::::::::::::::.::::::: gi|114 SECLPFWPENLSGKLCVRVVGCEGSSKPFFYNRQDNGTLLSLEDLNGGILVDVNTAEHST 2990 3000 3010 3020 3030 3040 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::::::: ::.:::::::: ::.:::: ..:::::::::: :::::. gi|114 VITFSDYHEGSAPALIMNHTPWDILTYKQSGSPEEMVLLPRQARLFAWADPTGTRKLTWT 3050 3060 3070 3080 3090 3100 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::: :::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|114 YAANVGEHDLLKDGCGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 3110 3120 3130 3140 3150 3160 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :.:..::::::::::::::.::::::.:::::::::::::::::::::::::. :::.:. gi|114 DYEITLSLHSLGLSLVNNESKQEVSYIGITSSGVVWEMKPKQKWKPFSQKQIILLEQSYQ 3170 3180 3190 3200 3210 3220 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :. :.:.::.:::.:::::::: :::::::::::::::::::::.::::: :::::::: gi|114 KHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRCPIKRDFLSGIQIEFKQSSHQRSLRAR 3230 3240 3250 3260 3270 3280 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV ::::::::::::..:::::::::::::::::::::::::::::::::::::::::::::: gi|114 LYWLQVDNQLPGAVFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3290 3300 3310 3320 3330 3340 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::.:::::::.:.::::::::::::.:::::::::::::.::::.::::::::: gi|114 LIQEMALKIDQGFLGAIIALFTPTTDPEAERRRTKLIQQDIDALNAELMETSMTDMSILS 3350 3360 3370 3380 3390 3400 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA ::::::::::::::::::::::::::::::::.:.::::::::::::::::::::::::: gi|114 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMFAVHSVNLLLKSIGATLTDVDDLIFKLA 3410 3420 3430 3440 3450 3460 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|114 YYEIRYQFYKRDQLIWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3470 3480 3490 3500 3510 3520 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|114 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3530 3540 3550 3560 3570 3580 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV ::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EELSRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3590 3600 3610 3620 3630 3640 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE :::::::.::::::::::::.:::::::::::::::::::::::::::::::::::::.. gi|114 ARPTGGIVDMASSTFQGIQRAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLENH 3650 3660 3670 3680 3690 3700 mKIAA3 MGTQE . : gi|114 IKKLEGETYRYHCAIPGSKKTILMVTNRRVLCIKEVEILGLMCVDWQCPFEDFVFPPSVS 3710 3720 3730 3740 3750 3760 >>gi|42454406|emb|CAF25187.1| VPS13C-1B protein [Homo sa (3585 aa) initn: 4661 init1: 4661 opt: 4661 Z-score: 5369.2 bits: 1006.4 E(): 0 Smith-Waterman score: 4661; 91.921% identity (97.748% similar) in 755 aa overlap (2-756:2831-3585) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS .::::::.:::::::::::.:::::.:.:: gi|424 ANNMEYLVGVSIKMSSFNLSRIVTLTPFCTIANKSSLELEVGEIASDGSMPTNKWNYIAS 2810 2820 2830 2840 2850 2860 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST :::.:::::.::::::: ::: ::::::::::::::::::::::::::::::.::::::: gi|424 SECLPFWPESLSGKLCVRVVGCEGSSKPFFYNRQDNGTLLSLEDLNGGILVDVNTAEHST 2870 2880 2890 2900 2910 2920 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::::::: ::.:::::::: ::.:::: ..:::::::::: :::::. gi|424 VITFSDYHEGSAPALIMNHTPWDILTYKQSGSPEEMVLLPRQARLFAWADPTGTRKLTWT 2930 2940 2950 2960 2970 2980 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::: :::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|424 YAANVGEHDLLKDGCGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 2990 3000 3010 3020 3030 3040 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :.:..::::::::::::::.::::::.::::::::::.::::::::::::::. :::.:. gi|424 DYEITLSLHSLGLSLVNNESKQEVSYIGITSSGVVWEVKPKQKWKPFSQKQIILLEQSYQ 3050 3060 3070 3080 3090 3100 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :. :.:.::.:::.:::::::: ::::::::: :::::::::::.::::: :::::::: gi|424 KHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRSPIKRDFLSGIQIEFKQSSHQRSLRAR 3110 3120 3130 3140 3150 3160 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|424 LYWLQVDNQLPGAMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3170 3180 3190 3200 3210 3220 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::.:::::::.:.::::::::::::.:::::::::::::.::::.::::::::: gi|424 LIQEMALKIDQGFLGAIIALFTPTTDPEAERRRTKLIQQDIDALNAELMETSMTDMSILS 3230 3240 3250 3260 3270 3280 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA ::::::::::::::::::::::::::::::::.:.::::::::::::::::::::::::: gi|424 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMFAVHSVNLLLKSIGATLTDVDDLIFKLA 3290 3300 3310 3320 3330 3340 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|424 YYEIRYQFYKRDQLIWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3350 3360 3370 3380 3390 3400 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|424 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3410 3420 3430 3440 3450 3460 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV ::..:::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|424 EELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3470 3480 3490 3500 3510 3520 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE :::::::.::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|424 ARPTGGIVDMASSTFQGIQRAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE 3530 3540 3550 3560 3570 3580 mKIAA3 MGTQE . :: gi|424 LEIQE >>gi|42454408|emb|CAF25188.1| VPS13C-2B protein [Homo sa (3628 aa) initn: 4661 init1: 4661 opt: 4661 Z-score: 5369.1 bits: 1006.4 E(): 0 Smith-Waterman score: 4661; 91.921% identity (97.748% similar) in 755 aa overlap (2-756:2874-3628) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS .::::::.:::::::::::.:::::.:.:: gi|424 ANNMEYLVGVSIKMSSFNLSRIVTLTPFCTIANKSSLELEVGEIASDGSMPTNKWNYIAS 2850 2860 2870 2880 2890 2900 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST :::.:::::.::::::: ::: ::::::::::::::::::::::::::::::.::::::: gi|424 SECLPFWPESLSGKLCVRVVGCEGSSKPFFYNRQDNGTLLSLEDLNGGILVDVNTAEHST 2910 2920 2930 2940 2950 2960 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::::::: ::.:::::::: ::.:::: ..:::::::::: :::::. gi|424 VITFSDYHEGSAPALIMNHTPWDILTYKQSGSPEEMVLLPRQARLFAWADPTGTRKLTWT 2970 2980 2990 3000 3010 3020 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::: :::::::: :::::::::::::::::::::::::::::::::::::::::::::: gi|424 YAANVGEHDLLKDGCGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 3030 3040 3050 3060 3070 3080 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :.:..::::::::::::::.::::::.::::::::::.::::::::::::::. :::.:. gi|424 DYEITLSLHSLGLSLVNNESKQEVSYIGITSSGVVWEVKPKQKWKPFSQKQIILLEQSYQ 3090 3100 3110 3120 3130 3140 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :. :.:.::.:::.:::::::: ::::::::: :::::::::::.::::: :::::::: gi|424 KHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRSPIKRDFLSGIQIEFKQSSHQRSLRAR 3150 3160 3170 3180 3190 3200 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|424 LYWLQVDNQLPGAMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3210 3220 3230 3240 3250 3260 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::.:::::::.:.::::::::::::.:::::::::::::.::::.::::::::: gi|424 LIQEMALKIDQGFLGAIIALFTPTTDPEAERRRTKLIQQDIDALNAELMETSMTDMSILS 3270 3280 3290 3300 3310 3320 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA ::::::::::::::::::::::::::::::::.:.::::::::::::::::::::::::: gi|424 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMFAVHSVNLLLKSIGATLTDVDDLIFKLA 3330 3340 3350 3360 3370 3380 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|424 YYEIRYQFYKRDQLIWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3390 3400 3410 3420 3430 3440 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|424 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3450 3460 3470 3480 3490 3500 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV ::..:::.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|424 EELSRQPRDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3510 3520 3530 3540 3550 3560 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE :::::::.::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|424 ARPTGGIVDMASSTFQGIQRAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE 3570 3580 3590 3600 3610 3620 mKIAA3 MGTQE . :: gi|424 LEIQE >>gi|55726320|emb|CAH89931.1| hypothetical protein [Pong (1573 aa) initn: 4763 init1: 4649 opt: 4654 Z-score: 5366.2 bits: 1004.7 E(): 0 Smith-Waterman score: 4654; 91.788% identity (97.483% similar) in 755 aa overlap (2-756:694-1448) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS .::::::.:::::::::::.:::::.:.:: gi|557 ANNMEYLVGVSIKMSSFNLSRIVTLTPFCTIANKSSLELEVGEIASDGSMPTNKWNYIAS 670 680 690 700 710 720 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST :::.::::::::::::: ::: ::::::::::::::::::::::::::::::.::::::: gi|557 SECLPFWPENLSGKLCVRVVGCEGSSKPFFYNRQDNGTLLSLEDLNGGILVDVNTAEHST 730 740 750 760 770 780 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::::::: ::.:::::::: ::.:::: ..:::::::::: :::::. gi|557 VITFSDYHEGSAPALIMNHTPWDILTYKQSGSPEEMVLLPRQARLFAWADPTGTRKLTWT 790 800 810 820 830 840 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::: :::::::: ::::::::::: :::::::::::::::::::::::::::::::::: gi|557 YAANVGEHDLLKDGCGQFPYDANIQTHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 850 860 870 880 890 900 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :.:..::::::::::::::.::::::.:::::::::::::::::::::::::. :::.:. gi|557 DYEITLSLHSLGLSLVNNESKQEVSYIGITSSGVVWEMKPKQKWKPFSQKQIILLEQSYQ 910 920 930 940 950 960 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR :. :.:.::.:::.:::::::: :::::::::::::::::::::.::::: :::::::: gi|557 KHQISRDHGWIKLDNNFEVNFDKDPMEMRLPIRCPIKRDFLSGIQIEFKQSSHQRSLRAR 970 980 990 1000 1010 1020 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|557 LYWLQVDNQLPGAMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 1030 1040 1050 1060 1070 1080 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::.:::::::.:.::::::::::: .:::::::::::::.::::.::::::::: gi|557 LIQEMALKIDQGFLGAIIALFTPTTDPEAETRRTKLIQQDIDALNAELMETSMTDMSILS 1090 1100 1110 1120 1130 1140 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA ::::::::::::::::::::::::::::::::.:.::::::::::::::::::::::::: gi|557 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMFAVHSVNLLLKSIGATLTDVDDLIFKLA 1150 1160 1170 1180 1190 1200 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|557 YYEIRYQFYKRDQLIWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 1210 1220 1230 1240 1250 1260 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|557 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 1270 1280 1290 1300 1310 1320 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV ::..:::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 EELSRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 1330 1340 1350 1360 1370 1380 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE :::::::.::::::::::::.:::::::::::::::::::::::::::::::::::::.. gi|557 ARPTGGIVDMASSTFQGIQRAAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLENR 1390 1400 1410 1420 1430 1440 mKIAA3 MGTQE . : gi|557 IKKLEGETYRYHCAIPGSKKTILMVTNRRVLCIKEVEILGLMCVDWQCPFEDFVFPPSVS 1450 1460 1470 1480 1490 1500 >>gi|74000345|ref|XP_864651.1| PREDICTED: similar to vac (3586 aa) initn: 4647 init1: 4647 opt: 4647 Z-score: 5353.0 bits: 1003.4 E(): 0 Smith-Waterman score: 4647; 91.523% identity (97.616% similar) in 755 aa overlap (2-756:2832-3586) 10 20 30 mKIAA3 PVANKSSLDLEVGEIASDGSIPTNKWHYVAS .::::::.:::::::::::.::.::.:.:: gi|740 ANNMEYLVGVSIKMSSFNLTRIVTLTPFCTIANKSSLELEVGEIASDGSMPTHKWNYIAS 2810 2820 2830 2840 2850 2860 40 50 60 70 80 90 mKIAA3 SECIPFWPENLSGKLCVGVVGYEGSSKPFFYNRQDNGTLLSLEDLNGGILVDINTAEHST :::.::::::::::::: ::: ::::.::::::::::::::::.::::::::.: ::::: gi|740 SECLPFWPENLSGKLCVRVVGCEGSSRPFFYNRQDNGTLLSLEELNGGILVDVNIAEHST 2870 2880 2890 2900 2910 2920 100 110 120 130 140 150 mKIAA3 VITFSDYHEGSAPALIMNHTQWDVLTYKQSGSQEELVLLPGETRLFAWADPTGIRKLTWN :::::::::::::::..:::. ::.::::::::::. :.:::.:::::::::: .::::. gi|740 VITFSDYHEGSAPALVINHTSQDVVTYKQSGSQEEVHLVPGEARLFAWADPTGTKKLTWT 2930 2940 2950 2960 2970 2980 160 170 180 190 200 210 mKIAA3 YAANFGEHDLLKDECGQFPYDANIQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA :::: :::.:::::::::::::: :::::::::::::::::::::::::::::::::::: gi|740 YAANTGEHSLLKDECGQFPYDANTQIHWVSFLDGRQRVLLFTDDVALVSKALQAEEMEQA 2990 3000 3010 3020 3030 3040 220 230 240 250 260 270 mKIAA3 DHEVALSLHSLGLSLVNNENKQEVSYVGITSSGVVWEMKPKQKWKPFSQKQIMSLEQAYS :::...::::::::::::::::::::.:::::::::::::::::::::::::. :::::. gi|740 DHEITFSLHSLGLSLVNNENKQEVSYIGITSSGVVWEMKPKQKWKPFSQKQIILLEQAYK 3050 3060 3070 3080 3090 3100 280 290 300 310 320 330 mKIAA3 KRLASQDRGWVKLDSNFEVNFDKVPMEMRLPIRCPIKRDFLSGIQVEFKQSPHQRSLRAR : .:.:.::.:::.::::::::::::::::..::::::::::::.:::::::::::::: gi|740 KYQVSRDHGWIKLDNNFEVNFDKVPMEMRLPVHCPIKRDFLSGIQIEFKQSPHQRSLRAR 3110 3120 3130 3140 3150 3160 340 350 360 370 380 390 mKIAA3 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 LYWLQVDNQLPGTMFPVVFHPVAPPKSIALDSEPKPFIDVSVITRFNEYSKVLQFKYFMV 3170 3180 3190 3200 3210 3220 400 410 420 430 440 450 mKIAA3 LIQEMALKVDQGFLGAVISLFTPTTDPEAERKRTKLIQQDIDALNTELMESSMTDMSILS ::::::::::::::::.:.::::.::::::::::::::.:::::::::::.::::::.:: gi|740 LIQEMALKVDQGFLGAIITLFTPATDPEAERKRTKLIQHDIDALNTELMETSMTDMSVLS 3230 3240 3250 3260 3270 3280 460 470 480 490 500 510 mKIAA3 FFEHFHISPVKLHLSLSLGSGGEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA :::::::::::::::::::.:.:::::::::::::::::::::::::::::::::::::: gi|740 FFEHFHISPVKLHLSLSLGTGSEESDKEKQEMIAIHSVNLLLKSIGATLTDVDDLIFKLA 3290 3300 3310 3320 3330 3340 520 530 540 550 560 570 mKIAA3 YYEIRYQFYKRDQLMWSVVRHYSEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|740 YYEIRYQFYKRDQLMWSVVRHYTEQFLKQMYVLVLGLDVLGNPFGLIRGLSEGVEALFYE 3350 3360 3370 3380 3390 3400 580 590 600 610 620 630 mKIAA3 PFQGAVQGPEEFAEGLVIGVRSLVGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR ::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: gi|740 PFQGAVQGPEEFAEGLVIGVRSLFGHTVGGAAGVVSRITGSVGKGLAAITMDKEYQQKRR 3410 3420 3430 3440 3450 3460 640 650 660 670 680 690 mKIAA3 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 EEMGRQPKDFGDSLARGGKGFLRGVVGGVTGIITKPVEGAKKEGAAGFFKGIGKGLVGAV 3470 3480 3490 3500 3510 3520 700 710 720 730 740 750 mKIAA3 ARPTGGIIDMASSTFQGIQRVAESTEEVSSLRPPRLIHEDGIIRPYDRQESEGSDLLEQE ::::::::::::::::::::.:::::::: :::::.::::::::::.:::::: :: ::: gi|740 ARPTGGIIDMASSTFQGIQRAAESTEEVSRLRPPRFIHEDGIIRPYERQESEGYDLYEQE 3530 3540 3550 3560 3570 3580 mKIAA3 MGTQE :: gi|740 PEIQE 756 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 23:38:05 2009 done: Mon Mar 16 23:46:16 2009 Total Scan time: 1080.270 Total Display time: 0.710 Function used was FASTA [version 34.26.5 April 26, 2007]