FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1397.ptfa, 736 aa vs ./tmplib.26680 library 1768281 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.8424+/-0.00487; mu= 11.2317+/- 0.325 mean_var=119.9376+/-28.289, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.1171 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1336 ( 929 res) mfj00936 ( 929) 400 79 2.2e-15 mKIAA4167 ( 342 res) mpj04828 ( 342) 165 39 0.001 >>mKIAA1336 ( 929 res) mfj00936 (929 aa) initn: 357 init1: 196 opt: 400 Z-score: 368.5 bits: 79.2 E(): 2.2e-15 Smith-Waterman score: 501; 27.935% identity (32.093% ungapped) in 494 aa overlap (53-532:7-450) 30 40 50 60 70 80 mKIAA1 KPIKELGLKFLSTFKVKYFIEKSMYAAVEHGPVLCSDSNILCLSWKGRVPKSEKEKPVCR : .: . .. :: : ::.. : : : mKIAA1 RALTAVGRLLRVPTMFFYLSKKIAVPNNVKLK--CI 10 20 30 90 100 110 120 130 mKIAA1 RRYYEEGWLATGNGRGVVGV----TFTSSHCRRDRSTPQRI--NFNLRGHNSEVVLVRWN ..:..: :. :.. : : :.. : ..:. . : ::.::.. : .: :: mKIAA1 SWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSNLSMNQNLEGHSGAVQVVTWN 40 50 60 70 80 90 140 150 160 170 180 190 mKIAA1 EPYQKLATCDADGGIFVWIQYEGRWSVELVNDRGAQV-SDFTWSHDGTQALISYRDGFVL : ::::.: : .: :.::. :.: : :..:.:. .: ...:. :: . : :.:: :. mKIAA1 EQYQKLTTSDQNGLIIVWMLYKGSWYEEMINNRNKSVVRSMSWNADGQKICIVYEDGAVI 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA1 VGSVSGQRHWSSEINLESQITCGI-WTPDDQQVLFGTADGQVIVMDCHGRMLAHVLLHES ::::.:.: :... :.. : . :. :.. .::: :.:.. ..: .: . mKIAA1 VGSVDGNRIWGKD--LKGIQLCHVTWSADSKILLFGMANGEIHIYDNQGNF--------- 160 170 180 190 200 260 270 280 290 300 310 mKIAA1 DGILSMSWNYPIFLVEDSSESDTDSDDYSPPQDGPAAYPIPVQNTKPLLTVSFTSGDISL :..:. : ::. .. . . . : .: :. : :.. : .: .. mKIAA1 --IMKMKLN---CLVNVTGAISIAGIHW---YHGTEGY---VEPDCPCLAICFDNGRCQI 210 220 230 240 250 320 330 340 350 360 370 mKIAA1 MNNYDDLSPTVIRSGLKEVVAQWCTQGDLLAVAGMEQQAQLSELPNGPLLKSAMVKFYNV : . .: .:..: .:. : :: :..::::: .. . .. : .:.::. mKIAA1 MRHENDQNPVLIDTGMYVVGIQWNHIGSVLAVAGSQKVVTQDKDIN-------IVQFYTP 260 270 280 290 300 380 390 400 410 420 430 mKIAA1 RGEHIFTLDTLVQRPIISICWGHRDSRLLMASGPALYVVRVEHRVSSLQLLCQQAIA-ST :::. :: . . . :. : .. .: .: . . : . :..... . mKIAA1 FGEHLGTLK-VPGKQMCSLSWEGGGLKIALAVDSFIYFANI--RPDYKWGYCSNTVVYAY 310 320 330 340 350 360 440 450 460 470 480 mKIAA1 LREDKDVNKLTLPPRLCSYL-----STAFIPTIKPPIPDPNNMRDFVSYPSAGNERLHCT : :. :. : . : .. .: : . .. :: . ..: : mKIAA1 TRPDR--------PEYCVVFWDTKNSEKYVKYVKSLI-SITTCGDFCILATKADEN-H-- 370 380 390 400 410 490 500 510 520 530 540 mKIAA1 MKRTEDDPEVGGPCYTLYLEYLGGLVPILKGRRISKLRPEFVIMDPRTDSKSDEIYGNSL . :.. :. : ..: : : .: : . :. : : :: : mKIAA1 -PQEENEMETFGATFVLVLCNSIG-TP-LDPKYID-LVPLFVAMTKTHVIAASKEAFYTW 420 430 440 450 460 550 560 570 580 590 600 mKIAA1 ISTVIDSCNCSDSSDIELSDDWAAKKSPKISRSSKSPKLPRISIEARKSPKLPRAAQEIS mKIAA1 QYRVAKKLTALEINQITRSRKEGRERIYHVDDVPSGSVDGVFDYSKAIQGTRDPICAITA 470 480 490 500 510 520 >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 119 init1: 63 opt: 165 Z-score: 159.3 bits: 39.0 E(): 0.001 Smith-Waterman score: 165; 24.599% identity (26.136% ungapped) in 187 aa overlap (83-263:7-188) 60 70 80 90 100 110 mKIAA1 GPVLCSDSNILCLSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRD : :. : .:: . . . .. :. :.. mKIAA4 VSGREARANYRAGSMATEHLPAERAQSLLSAPRREE 10 20 30 120 130 140 150 160 mKIAA1 RSTPQRINFNLR----GHNSEVVLVRWNEPYQKLATCDADGGIFVWIQYEGRWSVELVND . ::. :. :: ::.. . :... . ::. ::. :..: :.: . : . mKIAA4 E--PQKPNYALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYG- 40 50 60 70 80 90 170 180 190 200 210 220 mKIAA1 RGAQVSDFTWSHDGTQALISYRDGFVL-VGSVSGQRHWSSEINLESQITCGIWTPDDQQV .. ..:: .:: :... :.: : .: : .. . . .. . . . : ..: .. . mKIAA4 HSLEISDVAWSSDSSR-LVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLI 100 110 120 130 140 150 230 240 250 260 270 280 mKIAA1 LFGTADGQVIVMDCH-GRMLAHVLLHESDGILSMSWNYPIFLVEDSSESDTDSDDYSPPQ . :. : .: . . . :. : . : :: : ....: mKIAA4 VSGSFDESVKIWEVKTGKCLKTLSAH-SDPISAVNFNCNGSLIVSGSYDGLCRIWDAASG 160 170 180 190 200 210 290 300 310 320 330 340 mKIAA1 DGPAAYPIPVQNTKPLLTVSFTSGDISLMNNYDDLSPTVIRSGLKEVVAQWCTQGDLLAV mKIAA4 QCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLF 220 230 240 250 260 270 736 residues in 1 query sequences 1768281 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:43:38 2006 done: Mon Mar 27 10:43:38 2006 Scan time: 0.870 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]