FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4082.ptfa, 615 aa
 vs ./tmplib.26680 library

1768402 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.1783+/- 0.005; mu= 3.9618+/- 0.333
 mean_var=152.8234+/-35.723, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1037

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0476  ( 851 res)   mbg03637                   ( 851)  389   70 8.3e-13


>>mKIAA0476  ( 851 res)   mbg03637                        (851 aa)
 initn: 386 init1: 386 opt: 389  Z-score: 322.3  bits: 70.2 E(): 8.3e-13
Smith-Waterman score: 389;  54.310% identity (55.752% ungapped) in 116 aa overlap (3-116:140-254)

                                           10        20          30
mKIAA4                             GNSVIPRVSIIRDARAEERLCLFTSQLVL--Q
                                     ::  ::  .. :    :  . . ..::  .
mKIAA0 KSATVPELWARCLLGHCYGLWFLCLPAYVRSVPSRVRALHTAYHVLRE-MENRKVVLPDE
     110       120       130       140       150        160        

               40        50        60        70        80        90
mKIAA4 VCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAVLESTWPSRSRSGYFL
       ::::.:::::..: ::::.:::..::..::: ::.::::::::::::: ::: . .: . 
mKIAA0 VCYRVLMQLCSHYGQPVLSVRVMLEMRRAGIVPNTITYGYYNKAVLESKWPSGTPGGRLR
      170       180       190       200       210       220        

              100       110       120       130       140       150
mKIAA4 WTKVRNVVLGVAQFKRALKKHPHLPQTALSGGRSDLGYNSLSKDNVRREGPSTEDIQGEK
       :.:.::::::.:::.. :: . .  :                                  
mKIAA0 WAKLRNVVLGAAQFRQPLKDRRQQQQQQQQQQQQKQQVAEQQKSGSSQTEPYLERPSPTR
      230       240       250       260       270       280        




615 residues in 1 query   sequences
1768402 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:01:18 2006 done: Mon Mar 27 11:01:19 2006
 Scan time:  0.790 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]