FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1533.ptfa, 290 aa
 vs ./tmplib.26680 library

1768727 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.2918+/-0.00487; mu= 13.5655+/- 0.327
 mean_var=115.1574+/-26.384, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1195

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1201  ( 753 res)   mbg09862                   ( 753)  498   96 5.8e-21


>>mKIAA1201  ( 753 res)   mbg09862                        (753 aa)
 initn: 544 init1: 481 opt: 498  Z-score: 468.8  bits: 96.1 E(): 5.8e-21
Smith-Waterman score: 498;  43.976% identity (44.512% ungapped) in 166 aa overlap (37-202:349-512)

         10        20        30        40        50        60      
mKIAA1 EQTDGLDASSSQTVTPVAEPLSSEPTPPDGPTSSLGPLDLLSREELLTDTSNSSSSTGEE
                                     :..:   ::. . :.. :. :.::. : .:
mKIAA1 LEEEVMEGDGSLEKELAIDNIIGEKIEIMAPVTS-PSLDFNDNEDIPTELSDSSD-THDE
      320       330       340       350        360       370       

         70        80        90       100       110       120      
mKIAA1 GDLAALLPDLSGRLLINSVFHMGAERLQQMLFSDSPFLQGFLQQRKFTDVTLSPWSSDSK
       :.. :.  :::::  .: ::......: ..::..::::. :..::.:.:. . ::... .
mKIAA1 GEVQAFYEDLSGRQYVNEVFNFSVDKLYDLLFTNSPFLRDFMEQRRFSDIIFHPWKKEEN
        380       390       400       410       420       430      

        130       140       150       160       170       180      
mKIAA1 CHQRRVLTYTIPISNQLGPKSASVVETQTLFRRGPQAGGCVVDSEVLTQGIPYQDYFYTA
        .: ::. ::: ..: :.::.:.: ::::... . ..   :.:.::::. .::.::::: 
mKIAA1 GNQSRVILYTITLTNPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTI
        440       450       460       470       480       490      

        190       200       210       220       230       240      
mKIAA1 HRYCILGLARNKARLRDRELAKAEKLSLEEGGKDTRGLLSGLRRRKRPLSWRGHRDGPQH
       .:: .  .::::.:::                                            
mKIAA1 NRYTLTRVARNKSRLRVSTELRYRKQPWGFVKTFIEKNFWSGLEDYFRHLETELTKTEST
        500       510       520       530       540       550      




290 residues in 1 query   sequences
1768727 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:47:30 2006 done: Mon Mar 27 10:47:31 2006
 Scan time:  0.540 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]