FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0237.ptfa, 263 aa vs ./tmplib.26680 library 1768754 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.5626+/-0.0043; mu= 13.6242+/- 0.289 mean_var=81.9591+/-19.188, 0's: 0 Z-trim: 9 B-trim: 135 in 1/35 Lambda= 0.1417 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0751 ( 1297 res) mpg01166 (1297) 1255 266 5.3e-72 mFLJ00307 ( 516 res) mtg01156 ( 516) 184 47 2.3e-06 mKIAA4194 ( 320 res) mbg12940 ( 320) 154 41 0.00012 mKIAA1597 ( 407 res) mnh09216 ( 407) 145 39 0.00049 mKIAA0538 ( 826 res) msh37311 ( 826) 148 40 0.0005 mKIAA4186 ( 899 res) mfj00029 ( 899) 143 39 0.0011 >>mKIAA0751 ( 1297 res) mpg01166 (1297 aa) initn: 1253 init1: 917 opt: 1255 Z-score: 1385.1 bits: 266.2 E(): 5.3e-72 Smith-Waterman score: 1255; 71.591% identity (71.863% ungapped) in 264 aa overlap (1-263:1032-1295) 10 20 30 mKIAA0 RRSSLGAKMVAIVGLTQWSKSTLQLPQPEG ::::.::::::::::.. :.:. :: : :: mKIAA0 SISGDMCSLEKNDGSQSDTAVGALGTSGKKRRSSIGAKMVAIVGLSRKSRSASQLSQTEG 1010 1020 1030 1040 1050 1060 40 50 60 70 80 mKIAA0 ATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSSEGTFIFP-TRLGAESQF . :::::...::::::.:::::. .:::.:::::::: :: ::::..::: .::...::: mKIAA0 GGKKLRSTVQRSTETGLAVEMRNWMTRQASRESTDGSMNSYSSEGNLIFPGVRLASDSQF 1070 1080 1090 1100 1110 1120 90 100 110 120 130 140 mKIAA0 SDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATY :::::::::::.::::::::: :::.....::..::::::.:.::::. :::::.::: : mKIAA0 SDFLDGLGPAQLVGRQTLATPAMGDIQVGMMDKKGQLEVEIIRARGLVVKPGSKTLPAPY 1130 1140 1150 1160 1170 1180 150 160 170 180 190 200 mKIAA0 IKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFDEGPQGKVLQVIVWGDYGRMDHKCFM .:.:::.::.:.::::::::.:: .::::: : :.:.:::.:::.:::::::::::: :: mKIAA0 VKVYLLDNGVCIAKKKTKVARKTLEPLYQQLLSFEESPQGRVLQIIVWGDYGRMDHKSFM 1190 1200 1210 1220 1230 1240 210 220 230 240 250 260 mKIAA0 GMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRRLSQSSLESATSPSCS :.:::.::::.:: : ::.:::: ::..: ::. :::: :::::::.:.:: : mKIAA0 GVAQILLDELELSNMVIGWFKLFPPSSLVDPTLAPLTRRASQSSLESSTGPSYSRS 1250 1260 1270 1280 1290 >>mFLJ00307 ( 516 res) mtg01156 (516 aa) initn: 134 init1: 86 opt: 184 Z-score: 206.7 bits: 46.9 E(): 2.3e-06 Smith-Waterman score: 184; 23.045% identity (25.455% ungapped) in 243 aa overlap (1-231:214-445) 10 20 30 mKIAA0 RRSSLGAKMVAIVGLTQWSKSTLQLPQPEG :: . :::.. . . :: .. : : mFLJ00 CTVCFEDRNVKIKTGEWFFEERARKFPTAGRRETAGAKLLQ--SYQRLSKISVVPPTPPP 190 200 210 220 230 240 40 50 60 70 80 mKIAA0 -ATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSSEGTFIFP--TRLGAES . .. :...... : .... .. .: .: . .: : :. mFLJ00 FSESQCSSSVQKASTPDILKAFHQEDPKHPPDPVLKQDTPPSSPTHSAVFSGGLRHGSLI 250 260 270 280 290 300 90 100 110 120 130 140 mKIAA0 QFSDFLDGLG---PAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKS .... .: :...:. .: .: . .: .::. . ..:. .: mFLJ00 SINSTCTEMGNFDNANVTGEIEFA------IHYCV--KSCSLEICIKTCKNLAYGEEKKR 310 320 330 340 350 150 160 170 180 190 200 mKIAA0 LPATYIKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFDEGP---QGKVLQVIVWGDYG :.:.::: . . .:.::.: :.: :: ....: .. : . . ::: :: : mFLJ00 KCNPYVKTYLLPDRSSQGKRKTRVQKNTLDPTFEETLKYQVDPGQLMTRRLQVSVW-HLG 360 370 380 390 400 410 210 220 230 240 250 mKIAA0 RMDHKCFMG---MAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRRLSQSSLESAT . .. :.: . : : : .: . :: : mFLJ00 TLARRVFLGEVILPLAMWDFKDSTAQNARWYPLRAKAEKYEENIPQNNGELAVRAKLVLP 420 430 440 450 460 470 260 mKIAA0 SPSCS mFLJ00 AGPRKPQEAQEGQLALNGQLCLVVLGAKNLPVRSDGTLNSFVKG 480 490 500 510 >>mKIAA4194 ( 320 res) mbg12940 (320 aa) initn: 107 init1: 107 opt: 154 Z-score: 176.0 bits: 40.5 E(): 0.00012 Smith-Waterman score: 161; 31.333% identity (36.719% ungapped) in 150 aa overlap (112-243:172-317) 90 100 110 120 130 mKIAA0 RLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAI--MDRSGQLEVEVIEARGLTPK .::. .. . .:.: : ..::..: : mKIAA4 VKVPMNTVDLGQPIEEWRDLQGGEKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLK-K 150 160 170 180 190 200 140 150 160 170 180 190 mKIAA0 PGSKSLPATYIKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFDEGP--QGKVLQVIVW .: :.: .:..:: . :::: : ::: .: ..... : : : : . .::.: mKIAA4 MDVGGLSDPYVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSF-EIPFEQIQKVQVVVT 210 220 230 240 250 200 210 220 230 240 mKIAA0 G-DYGRMDH-----KCFMGMAQIMLDEL----DLSA----AVTGWYKLFPTSSVADSTLG :: .. . : :.: .. :: :. : .. :..: : : :. :: mKIAA4 VLDYDKLGKNEAIGKIFVG-SNATGTELRHWSDMLANPRRPIAQWHSLKPEEEV-DALLG 260 270 280 290 300 310 250 260 mKIAA0 SLTRRLSQSSLESATSPSCS . mKIAA4 KNK 320 >>mKIAA1597 ( 407 res) mnh09216 (407 aa) initn: 101 init1: 101 opt: 145 Z-score: 164.8 bits: 38.8 E(): 0.00049 Smith-Waterman score: 153; 24.324% identity (26.341% ungapped) in 222 aa overlap (44-261:48-256) 20 30 40 50 60 70 mKIAA0 GLTQWSKSTLQLPQPEGATKKLRSNIRRSTETGIAVEMRSRVTRQGSRESTDGSTNSNSS :: : : .. : ..: .. :: .:: mKIAA1 LPDNQFSHPDKLKRMSKSVPAFLQDESDDRETDTASESSYQLRRY--KKSPSSLTNLSSS 20 30 40 50 60 70 80 90 100 110 120 130 mKIAA0 EGTFIFPTRLGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEA : . . : : .: . .: .. : .: . .. .:.: : . mKIAA1 SGMTSLSSASG--SVMSVYSGDFGNLEVKGSVQFA--------LDYVESLKELHVFVAQC 80 90 100 110 120 140 150 160 170 180 190 mKIAA0 RGLTPKPGSKSLPATYIKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFDEGPQ---GK . :. .:. :.:.::: . . ..:::: :.::: .:.:.. : . : . mKIAA1 KDLAAADVKKQRSDPYVKTYLLPDKGKMGKKKTLVVKKTLNPVYNEILRYKIERQFLKTQ 130 140 150 160 170 180 200 210 220 230 240 mKIAA0 VLQVIVWGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTS-SVADSTLGSLTRRL :.. :: . .. :.: ... :. : .. . : .: . ..: .: . .: mKIAA1 KLNLSVW-HRDTFKRNSFLGEVELDLETWDWDSKQNKQLKWYPLKRKTAPVALETENRGE 190 200 210 220 230 240 250 260 mKIAA0 SQSSLESATSPSCS . .:. . :: mKIAA1 MKLALQYVPEPSPGKKLPTTGEVHIWVKECLDLPLLRGSHLNSFVKCTILPDTSRKSRQK 250 260 270 280 290 300 >>mKIAA0538 ( 826 res) msh37311 (826 aa) initn: 77 init1: 50 opt: 148 Z-score: 164.6 bits: 39.8 E(): 0.0005 Smith-Waterman score: 148; 26.619% identity (29.600% ungapped) in 139 aa overlap (113-245:142-272) 90 100 110 120 130 mKIAA0 LGAESQFSDFLDGLGPAQIVGRQTLATPPMGDVHIAIMDRSG----QLEVEVIEARGLTP :..:. . : .:. :.::: :.: mKIAA0 CLTRDALASHPKGFSGWTHLVEVDPNEEVQGEIHLRLEVVPGVHASRLRCAVLEARDLAP 120 130 140 150 160 170 140 150 160 170 180 190 mKIAA0 KP-GSKSLPATYIKAYLLENGACVAKKKTKVAKKTCDPLYQQALLFD-EGPQGKVLQVIV : .. : : ..... :: ..:.:.::.: : ..... :. : ...: : . mKIAA0 KDRNGASDP--FVRVHY--NGRT---QETSVVKKSCYPRWNETFDFELEKGASEALLVEA 180 190 200 210 220 200 210 220 230 240 250 mKIAA0 WGDYGRMDHKCFMGMAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRRLSQSSLES : :. .... :.: . . ...: . ::..: : .: . . :.: mKIAA0 W-DWDLVSQNDFLGKVVVNVQRLCSAQQEEGWFRLQPDQSKSRQGKGNLGSLQLEVRLRD 230 240 250 260 270 280 260 mKIAA0 ATSPSCS mKIAA0 ETVLPSVCYQPLVQLLCQEVKLGTQGPGRLIPVIEETTSAECRQEVATTLLKLFLGQGLA 290 300 310 320 330 340 >>mKIAA4186 ( 899 res) mfj00029 (899 aa) initn: 144 init1: 72 opt: 143 Z-score: 158.6 bits: 38.8 E(): 0.0011 Smith-Waterman score: 143; 33.333% identity (35.922% ungapped) in 111 aa overlap (126-231:784-891) 100 110 120 130 140 150 mKIAA0 LGPAQIVGRQTLATPPMGDVHIAIMDRSGQLEVEVIEARGLTPKPGSKSLPATYIKAYLL :.: : :.::: .: . : :.. ::: mKIAA4 VSLNTEAGDSRQGRLGEIQLTVRYVCLRHCLRVLVNGCRNLTPCTSSGADP--YVRIYLL 760 770 780 790 800 810 160 170 180 190 200 210 mKIAA0 ENGACVAKKKTKVAKKTCDPLYQQALLFDEGPQGKV----LQVIVWGDYGRMDHK-CFMG . ...:::.: .:: .::..... : :.:.: :.: : .. .:. .: mKIAA4 PERRWASRKKTSVKQKTLEPLFDETFEF-FVPMGEVQKRSLDVAVKNSRPLGSHRRKELG 820 830 840 850 860 870 220 230 240 250 260 mKIAA0 MAQIMLDELDLSAAVTGWYKLFPTSSVADSTLGSLTRRLSQSSLESATSPSCS . : :.. :: . . ::.: mKIAA4 KVLIDLSKQDLIKGFSQWYELTADGQPRS 880 890 263 residues in 1 query sequences 1768754 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:15:30 2006 done: Mon Mar 27 10:15:31 2006 Scan time: 0.490 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]