FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1170.ptfa, 771 aa vs ./tmplib.26680 library 1768246 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.9077+/-0.00426; mu= 5.8126+/- 0.282 mean_var=130.2442+/-31.011, 0's: 0 Z-trim: 1 B-trim: 25 in 1/35 Lambda= 0.1124 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1761 ( 760 res) mbg04392 ( 760) 1389 237 6.5e-63 >>mKIAA1761 ( 760 res) mbg04392 (760 aa) initn: 2896 init1: 1020 opt: 1389 Z-score: 1221.8 bits: 236.8 E(): 6.5e-63 Smith-Waterman score: 2982; 60.526% identity (71.029% ungapped) in 798 aa overlap (1-769:52-760) 10 20 30 mKIAA1 NLRRESEGSVDCPTLEFEYGDSDGHAAELS : :..::: . : :::::.:.: ::::. mKIAA1 PPPATAQPPPGAPRAAGGLLPGGKAREFNRNQRKDSEGYSESPDLEFEYADTDKWAAELA 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 ELYSYTENLEFTTNRKCFEEDFRTQVQDTKEWLELEEDAQKTYVMGLLDRLEVVSREKRL :::::::. :: :::::::::: .:.: :.: ::. . ..:..: ::: :::..::::: mKIAA1 ELYSYTEGPEFLMNRKCFEEDFRIHVSD-KKWTELDTNQHRTHAMRLLDGLEVTAREKRL 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 KVARAVLYLAQGTFGECDSEVDVLHWSRYNCFLLYQMGTFSAFLELLHMEIDNSQASSSA :::::.::.::::::::.::..: : ::: ::: ..:::.:..:::.:::::: : ::: mKIAA1 KVARAILYVAQGTFGECSSEAEVQFWMRYNIFLLLEVGTFNALVELLNMEIDNSAACSSA 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 LRKPAVSIADSTELRVLLSVMYLMVENIRLEREIDPCGWRTARETFRTELSFSTHNEEPF .::::.:.::::.:::::..:::.::... . . : ::: :.:::.::. .:.::: mKIAA1 VRKPAISLADSTDLRVLLNIMYLIVETVHQDCDGDKAEWRTMRQTFRAELGSPLYNNEPF 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 ALLLFSMVTKFCSGLAPHFPIKKVLLLLWKVVMFTLGGFEHLQALKIQKRAELGLPPLAE :..::.:::::::: :::::.:::::::::.:. ::::::.::..: .::. :::::: : mKIAA1 AIMLFGMVTKFCSGHAPHFPMKKVLLLLWKTVLCTLGGFEELQSMKAEKRTLLGLPPLPE 270 280 290 300 310 320 280 290 300 310 320 330 mKIAA1 DSIQVVKSMRAASPPSYTLDLGESQLAPPPSKLRGRRGSRRQLLTKQDSLDIYNERDLFK :::.:...:::::::. . :: :.: . :::: ... : :::.:: .:::: .: mKIAA1 DSIKVIRNMRAASPPASASDLIEQQ------QKRGRR--EHKALIKQDNLDAFNERDPYK 330 340 350 360 370 340 350 360 370 380 390 mKIAA1 TEEPATEEEEESAADGERTLDGELDLLEQDPLVPPPPSQTPLSTDRVAFPKGLPWAPKVR ... . :::::. : . .:.:: ::.: ..::: : : .:::.. ::::::::::: mKIAA1 ADD-SREEEEEN--DDDSSLEGEAFPLERDEVMPPP-LQHP-QTDRLTCPKGLPWAPKVR 380 390 400 410 420 400 410 420 430 440 450 mKIAA1 QKDIEHFLEMSRNKFIGFTLGQDTDTLVGLPRPIHESVKTLKQHKYISIADIQIKNEEEL .:::: ::: ::.::::.:::.::.:.::::::::::.:::::::: :::..: . ::: mKIAA1 EKDIEMFLESSRSKFIGYTLGSDTNTVVGLPRPIHESIKTLKQHKYTSIAEVQAQMEEEY 430 440 450 460 470 480 460 470 480 490 500 510 mKIAA1 EKCPLSLGEEVVPETPSEILYQGMLYSLPQYMIALLKILLAAAPTSKAKTDSINILADVL . ::: ::: : ..:.: ::::.: :::::::::::::::::::::::::::::::::: mKIAA1 LRSPLSGGEEEVEQVPAETLYQGLLPSLPQYMIALLKILLAAAPTSKAKTDSINILADVL 490 500 510 520 530 540 520 530 540 550 560 570 mKIAA1 PEEMPVTVLQSMKLGIDVNRHKEIIVKSISALLLLLLKHFKLNHIYQFEYVSQHLVFANC ::::: mKIAA1 PEEMP------------------------------------------------------- 550 580 590 600 610 620 630 mKIAA1 IPLILKFFNQNILSYITAKNSISVLDYPCCTIQDLPELTTESLEAGDNSQFCWRNLFSCI :::::::: :....:::::.::::::::.::::::::::: mKIAA1 --------------------SISVLDYPHCVVNELPELTAESLEAGDNNQFCWRNLFSCI 560 570 580 590 640 650 660 mKIAA1 NLLRLLNKLTKWKHSRTM----------------------------LLKIQTKYLGRQWR ::::.::::::::::::: :::.:::::::::: mKIAA1 NLLRILNKLTKWKHSRTMMLVVFKSAPILKRALKVKQAMMQLYVLKLLKVQTKYLGRQWR 600 610 620 630 640 650 670 680 690 700 710 720 mKIAA1 KSNMKTMSAIYQKVRHRMNDDWAYGNDIDARPWDFQAEECTLRANIEAFNSRRYDKPQDS :::::::::::::::::.:::::::::.::::::::::::.:::::: ::.::::. ... mKIAA1 KSNMKTMSAIYQKVRHRLNDDWAYGNDLDARPWDFQAEECALRANIERFNARRYDRTHSN 660 670 680 690 700 710 730 740 750 760 770 mKIAA1 -EFSPVDNCLQSVLGQRLDLPEDFHYSYELWLEREVFSQPICWEELLQNH .: :::::::::::::.::::::...:.:::::::::.:: :::::: mKIAA1 PDFLPVDNCLQSVLGQRVDLPEDFQMNYDLWLEREVFSKPISWEELLQ 720 730 740 750 760 771 residues in 1 query sequences 1768246 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:37:41 2006 done: Mon Mar 27 10:37:42 2006 Scan time: 0.910 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]