FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1256.ptfa, 1539 aa vs ./tmplib.26680 library 1767478 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.3553+/-0.00824; mu= -10.9662+/- 0.539 mean_var=630.3084+/-152.410, 0's: 0 Z-trim: 27 B-trim: 0 in 0/36 Lambda= 0.0511 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 41, opt: 29, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0382 ( 1553 res) mbg03948 (1553) 448 50 5.7e-06 mFLJ00369 ( 939 res) msh02173 ( 939) 410 47 3e-05 mKIAA0142 ( 809 res) mbg20462 ( 809) 362 43 0.00031 mKIAA1415 ( 1665 res) mib23074 (1665) 319 40 0.0043 >>mKIAA0382 ( 1553 res) mbg03948 (1553 aa) initn: 332 init1: 148 opt: 448 Z-score: 199.6 bits: 49.7 E(): 5.7e-06 Smith-Waterman score: 448; 27.835% identity (30.337% ungapped) in 388 aa overlap (1009-1377:759-1133) 980 990 1000 1010 1020 1030 mKIAA1 DYMANNEDELNFSKGQLINVMNKDDPDWWQGETNGLTGLFPSNYVKMTTDSDPSQQWCAD ::... : .. . :: :. : .. mKIAA0 DQVQEEECEVERVAEHGTPKPFRKFDSIAFGESQSEDEQFEND---LETDP-PNWQQLVS 730 740 750 760 770 780 1040 1050 1060 1070 1080 1090 mKIAA1 LQALDTMQPTERKRQGYIHELIQTEERYMDDLQLVIEVFQKRMAESGFLTEADMALIFVN ..: ..:.: ::: :.::. ::. .. :... .:: .:... :.:. ... :: : mKIAA0 REVLLGLKPSEIKRQEVINELFYTERAHVRTLKVLDQVFYQRVSREGILSPSELRKIFSN 790 800 810 820 830 840 1100 1110 1120 1130 1140 1150 mKIAA1 WKELIMSNTKL---LRALRVRKKTG-----GEKMPVQMIGDILAAELSHMQAYIRFCSCQ ..... .. : ..:.: :..:. :: . . . : .:.: : ::: : mKIAA0 LEDILQLHVGLNEQMKAVRKRNETSVIDHIGEDLLIWFSGPG-EEKLKHAAA--TFCSNQ 850 860 870 880 890 900 1160 1170 1180 1190 1200 1210 mKIAA1 LNGATLLQQKTDEDTDFKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENT . ..... .:. :. :.. :.: :. . :.... :::.:.::::. .: . : mKIAA0 PFALEMIKSRQKKDSRFHTFVQDAESNPLCRRLQLKDIIPTQMQRLTKYPLLLDNIAKYT 910 920 930 940 950 960 1220 1230 1240 1250 1260 mKIAA1 PQSHVDHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQCEGL--AEQLIFNSL .. ..: : .. ... . ::..::: ::..::: : ... .: .: . : mKIAA0 EWPP-EREKVKKAADHCRQILNYVNQAVREAENKQRLEDYQRRLDTSNLKLSEYPNVDEL 970 980 990 1000 1010 1020 1270 1280 1290 1300 1310 1320 mKIAA1 TNC-LGPRKLLHSGKL-YKTKSNK--ELHAFLFNDFLLLTYLVRQFAAASGHEKLFNSKS : : ::..: : : .:.. .: .:...:..:.:.: . . : :.. : . mKIAA0 RNLDLTKRKMIHEGPLVWKVNRDKSIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTA 1030 1040 1050 1060 1070 1080 1330 1340 1350 1360 1370 mKIAA1 SAQFRMYKTPIF-LNEVLVK-LPTDPSSDEPVFHISHID---RVYTLRTDNINERTAWVQ ... . .:.. :. :::. . :: .. .: :: : ..: : .....:.:.: mKIAA0 DSKHTF--SPVIKLSTVLVRQVATD---NKALFVISMSDNGAQIYELVAQTVSEKTVWQD 1090 1100 1110 1120 1130 1380 1390 1400 1410 1420 1430 mKIAA1 KIKGASEQYIDTEKKKREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEVS mKIAA0 LICRMAASVKEQSTKPIPLPQPPPCEGDNDEEEPAKLKVEHHDLSVAGLQSPDRVLGLES 1140 1150 1160 1170 1180 1190 >>mFLJ00369 ( 939 res) msh02173 (939 aa) initn: 297 init1: 170 opt: 410 Z-score: 186.7 bits: 46.6 E(): 3e-05 Smith-Waterman score: 410; 26.613% identity (27.887% ungapped) in 372 aa overlap (1023-1381:406-773) 1000 1010 1020 1030 1040 1050 mKIAA1 GQLINVMNKDDPDWWQGETNGLTGLFPSNYVKMTTDSDPSQQWCADLQALDTMQPTERKR ... . :. . . ..: .. .. :: mFLJ00 EPLAPPESTEDNGETESPEPGDDGEPGRSGLELEPEEPPGWRELVPPDTLLSLPKSQVKR 380 390 400 410 420 430 1060 1070 1080 1090 1100 1110 mKIAA1 QGYIHELIQTEERYMDDLQLVIEVFQKRMAESGFLTEADMALIFVNWKELIMSNTKLLRA : : ::. :: .. :... ..: . ::..::. .. :: . ::: .. .: mFLJ00 QEVISELLVTEAAHVRMLRVLHDLFYQPMADGGFFPLDELQNIFPSLDELIEVHSLFLDR 440 450 460 470 480 490 1120 1130 1140 1150 1160 mKIAA1 LRVRKKTGGEKMPVQMIGDIL-----AAELSHMQAYI-RFCSCQLNGATLLQQKTDEDTD : :.. .: . .. :::.: .:: : .: :::: : . :. : .. mFLJ00 LMKRRQESG--YLIEEIGDVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKEPR 500 510 520 530 540 550 1170 1180 1190 1200 1210 1220 mKIAA1 FKEFLKKLASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPQSHVDHSSLKLALER : :... : :::. . :.... :::.:.::::..:: .:: .: .......:: : mFLJ00 FCAFVQEAESRPRCRRLQLKDMIPTEMQRLTKYPLLLQSIGQNTEES-TERGKVELAAEC 560 570 580 590 600 610 1230 1240 1250 1260 1270 1280 mKIAA1 AEELCSQVNEGVREKENSDRLEWIQAHVQCEGLAEQL--IFNSLTNC-LGPRKLLHSGKL .:. .::..::. :. ::. : ... : .. ... . : . .::.: : : mFLJ00 CREILHHVNQAVRDMEDLLRLKDYQRRLDLTHLRQSSDPMLSEFKNLDITKKKLVHEGPL 620 630 640 650 660 670 1290 1300 1310 1320 1330 1340 mKIAA1 -YKTKSNK--ELHAFLFNDFLLLTYLVRQFAAASGHEKLFNSKSSAQFRMYKTPIFLNEV ... ..: :.:..:..:.::: . ..: . .. ... : . . :. . mFLJ00 TWRVTKDKAIEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGK-TMLRPVLRLTSA 680 690 700 710 720 730 1350 1360 1370 1380 1390 mKIAA1 LVK-LPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKGASEQYIDTEKKKREKA ... . :: .. .: .. ..: : ... .:: : . : mFLJ00 MTREVATDHKAFYVIFTWDQEAQIYELVAQTSSERKNWCNLITETAGSLKVPAPASRLKP 740 750 760 770 780 790 1400 1410 1420 1430 1440 1450 mKIAA1 YQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEVSMGSQSYTTRTLQDTLNPKWN mFLJ00 RPSPSSIREPLLSSSENGTGGAEMAPADARTERLLNDLLPFCRPGPEGQLAATALQKVLS 800 810 820 830 840 850 >>mKIAA0142 ( 809 res) mbg20462 (809 aa) initn: 189 init1: 189 opt: 362 Z-score: 168.3 bits: 43.0 E(): 0.00031 Smith-Waterman score: 363; 22.275% identity (24.543% ungapped) in 422 aa overlap (974-1375:195-597) 950 960 970 980 990 1000 mKIAA1 RQKGWFPASHVKLLGPSSERTMPTFHAVCQVIAMYDYMANNEDELNFSKGQLINVMNKDD : : .... .:::::.::::..:.: .. mKIAA0 SQSSHSRTSKLLQSQYRSLDMTDNTNSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEE 170 180 190 200 210 220 1010 1020 1030 1040 1050 mKIAA1 PDWWQGETNGLTGLFPSNYVKMTTDSD-PSQQWCADLQA----LDTMQPTERKRQGYIHE ::.: :: :: ::::::. :. : . . :.. .:: .. . ... mKIAA0 GGWWEGTHNGRTGWFPSNYVREIKPSEKPVSPKSGTLKSPPKGFDTTAINKSYYNVVLQN 230 240 250 260 270 280 1060 1070 1080 1090 1100 1110 mKIAA1 LIQTEERYMDDLQLVIEVFQKRMAESGFLTEADMALIFVNWKELIMSNTKLLRALRVRKK ...::..: .:: :. .. . . : :. :. . .. : .:. . :...:. : mKIAA0 ILETEHEYSKELQSVLSTYLRPLQTSDKLSSANTSYLMGNLEEISSFQQVLVQSLEECTK 290 300 310 320 330 340 1120 1130 1140 1150 1160 1170 mKIAA1 TGGEKMPVQMIGDILAAELSHMQA-YIRFCSCQLNGATLLQQKTDEDTDFKEFLK-KLAS . . : .: . . . .:.. :. .:. . .....: :... :. ::.. : :: mKIAA0 SPEAQ---QRVGGCFLSLMPQMRTLYLAYCANHPSAVSVL---TEHSEDLGEFMETKGAS 350 360 370 380 390 1180 1190 1200 1210 1220 1230 mKIAA1 DPRCKGMPLSSFLLKPMQRITRYPLLIRSILENTPQSHVDHSSLKLALERAEELCSQVNE .: . :.. : ::..:. .:: :.. . .. . : :..... .. ..: .: .: mKIAA0 SPGI--LVLTTGLSKPFMRLDKYPTLLKELERHMEDYHPDRQDIQKSMTAFKNLSAQCQE 400 410 420 430 440 450 1240 1250 1260 1270 1280 mKIAA1 GVREKENSDRL------EWIQAHVQCEGLAEQLIFNSLTNCLGPRK------LLHSGKLY ..:: .. : .. : . . .. .: : .. :: . : mKIAA0 VRKRKELELQILTEPIRSWEGDDIKTLGSVTYMSQVTI-QCAGSEEKNERYLLLFPNLLL 460 470 480 490 500 510 1290 1300 1310 1320 1330 1340 mKIAA1 KTKSNKELHAFLFNDFLLLTYL-VRQFAAASGHEKLFNSKSSAQFRMYKTPIFLNEVLVK ... .. .:... : : . . .. . .:.. :. ..: .....::. mKIAA0 MLSASPRMSGFIYQGKLPTTGMTITKLEDSENHRNAFEISGS----------MIERILVS 520 530 540 550 560 1350 1360 1370 1380 1390 1400 mKIAA1 LPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKGASEQYIDTEKKKREKAYQAR .. . : : :... .: .. . .:. ... mKIAA0 CTSQQDLHEWVEHLQKQTKVTSVSNPTIKPHSVPSHTLPSHPLTPSSKHADSKPVALTPA 570 580 590 600 610 620 1410 1420 1430 1440 1450 1460 mKIAA1 SQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEVSMGSQSYTTRTLQDTLNPKWNFNCQ mKIAA0 YHTLPHPSHHGTPHTTISWGPLEPPKTPKPWSLSCLRPAPPLRPSAALCYKEDLSKSPKT 630 640 650 660 670 680 >>mKIAA1415 ( 1665 res) mib23074 (1665 aa) initn: 249 init1: 220 opt: 319 Z-score: 147.9 bits: 40.2 E(): 0.0043 Smith-Waterman score: 327; 24.631% identity (27.174% ungapped) in 406 aa overlap (1009-1398:20-403) 980 990 1000 1010 1020 1030 mKIAA1 DYMANNEDELNFSKGQLINVMNKDDPDWWQGETNGLTGLFPSNYVKMTTDSDPSQQWCAD : .: : :.. : . :: mKIAA1 AAARPRRGKFGRRAAMEAPGSGGGDGGGDPGGDGAHPDARGPVSGPCA- 10 20 30 40 1040 1050 1060 1070 1080 1090 mKIAA1 LQALDTMQPTERKRQGYIHELIQTEERYMDDLQLVIEVFQKRM-------AESGFLTEAD : :. . : : ..:.. ::. :. :... .: .:. .:.: ::: . mKIAA1 -AARDSERQL-RLRLCVLNEILGTERDYVGTLRFLQSAFLQRIRQNVADSVEKG-LTEEN 50 60 70 80 90 100 1100 1110 1120 1130 1140 1150 mKIAA1 MALIFVNWKELIMSNTKLLRALRVRKKTGGEKMPVQMIGDILAAELSHMQAYIRFCSCQL . ..: : .... . .: ::. . : . . .:... ... .: ..:: . mKIAA1 VKVLFSNIEDILEVHKDFLAALEYCLHP--EPQSQHELGNVFLKFKDKFCVYEEYCSNHE 110 120 130 140 150 160 1160 1170 1180 1190 1200 mKIAA1 NGATLLQQKTDEDTDFKEFLKK--LASDPRCKGMPLSSFLLKPMQRITRYPLLIRSILEN .. :: . .. . :: . : . . .:: ..::.:.::: .::::.. . . mKIAA1 KALRLLVE-LNKVPAVRAFLLSCMLLGGRKTTDIPLEGYLLSPIQRICKYPLLLKELAKR 170 180 190 200 210 220 1210 1220 1230 1240 1250 1260 mKIAA1 TPQSHVDHSSLKLALERAEELCSQVNEGVREKENSDRLEWIQAHVQC-EGLAEQLIFNSL :: .: ::.... ::. . .::..:: :. :. . :: .:.:.. :: ..: mKIAA1 TPGKHPDHTAVQSALQAMKTVCSNINETKRQMEKLEALEQLQSHIEGWEG-------SNL 230 240 250 260 270 1270 1280 1290 1300 1310 1320 mKIAA1 TN-CLGPRKLLHSGKLYKTKSN--KELHAFLFNDFLLLTYLVRQFAAASGHEKLFNSKS- :. : .:: .:.: : ... .: :::.. ::.: :. ....... .:: mKIAA1 TDICT---ELLLQGNLLKISAGNIQERAFFLFDN--LLVYCKRKSRVTGSKKSTKRTKSI 280 290 300 310 320 330 1330 1340 1350 1360 1370 1380 mKIAA1 SAQFRMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKGA .... ... : . . :. : ..: .: . . . : . .: : : mKIAA1 NGSLYIFRGRINTEVMEVENVEDGTAD---YHSNGYTVTNGWKIHNTAKNKWFVCMAKTA 340 350 360 370 380 1390 1400 1410 1420 1430 1440 mKIAA1 SE--QYIDTEKKKREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEVSMGS : ...:. ..::. mKIAA1 EEKQKWLDALIREREQRESLKLGMERDAYVMIAEKGEKLYHMMMSKKVNLIKDRRRKLST 390 400 410 420 430 440 1539 residues in 1 query sequences 1767478 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:39:29 2006 done: Mon Mar 27 10:39:30 2006 Scan time: 1.250 Display time: 0.310 Function used was FASTA [version 3.4t11 Apr 17, 2002]