FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0462.ptfa, 2056 aa
 vs ./tmplib.26680 library

1766961 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.9283+/-0.00525; mu= 15.3543+/- 0.351
 mean_var=131.8931+/-30.472, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1117

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 42, opt: 30, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0896  ( 1765 res)   mbg01966                  (1765)  205   46 0.00011


>>mKIAA0896  ( 1765 res)   mbg01966                       (1765 aa)
 initn: 221 init1: 179 opt: 205  Z-score: 176.5  bits: 46.0 E(): 0.00011
Smith-Waterman score: 210;  24.719% identity (28.758% ungapped) in 178 aa overlap (282-438:38-211)

             260       270       280       290       300       310 
mKIAA0 ATLASAGQGAGHLQLHNAAVDWLGRCKKYLSQKNVVEKLNANVMHGKHVMVLECTCHIMS
                                     .. .:::. . .. ... .. : :   ...
mKIAA0 FILAPAVGSLTTAATGSGQGPSTSTIPGPSTEPSVVESKDRKA-NAHFILKLLCDSAVLQ
        10        20        30        40        50         60      

              320       330       340        350       360         
mKIAA0 -YLADVTNALSQSNGQGPSHLSVDGEERAIEVDS-DWVEELAVEEEDSQAEDSD------
        :: .. .: ... :. :   .:.:.  .  .   . ....:  : ... .. :      
mKIAA0 PYLRELLSA-KDARGMTPFMSAVSGRAYSAAITILETAQKIAKAEVSASEKEEDVFMGMV
         70         80        90       100       110       120     

                       370       380       390       400       410 
mKIAA0 -------EDS-----LCNKLCTFTITQKEFMNQHWYHCHTCKMVDGVGVCTVCAKVCHKD
              .::      ::  :.:: :  : .::  ..:.:: .....  :: ::.:::: 
mKIAA0 CPSGTNPDDSPLYVLCCNDTCSFTWTGAEHINQDIFECRTCGLLESLCCCTECARVCHKG
         130       140       150       160       170       180     

             420        430       440       450       460       470
mKIAA0 HEISYAKYG-SFFCDCGAKEDGSCLALVKRTPSSGMSSTMKESAFQSEPRVSESLVRHAS
       :. .  . . . .:::  :   .: .:.                                
mKIAA0 HDCKLKRTSPTAYCDCWEKC--KCKTLIAGQKSARLDLLYRLLTATNLVTLPNSRGEHLL
         190       200         210       220       230       240   




2056 residues in 1 query   sequences
1766961 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:21:20 2006 done: Mon Mar 27 10:21:21 2006
 Scan time:  1.490 Display time:  0.110

Function used was FASTA [version 3.4t11 Apr 17, 2002]