FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1087.ptfa, 723 aa
 vs ./tmplib.26680 library

1768294 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.0557+/-0.00412; mu= 20.0746+/- 0.277
 mean_var=81.7931+/-18.678, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1418

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1500  ( 1728 res)   mbf00247                  (1728)  184   48 7.1e-06


>>mKIAA1500  ( 1728 res)   mbf00247                       (1728 aa)
 initn: 166 init1:  96 opt: 184  Z-score: 197.8  bits: 48.4 E(): 7.1e-06
Smith-Waterman score: 216;  26.642% identity (30.932% ungapped) in 274 aa overlap (196-449:273-528)

         170       180       190       200       210       220     
mKIAA1 AGNVLRRHAADAARRPGATDGAPDDEDDGASRIFFEPSLYHCLENCGSVLLSVACQGGEG
                                     : : :. . :.  :. ::: ..:  . :. 
mKIAA1 KIQKVMDSFQFLVKDSKPNVVSDNVFHIQWSLISFKYTSYNVSEKAGSVSVTVQ-RTGNL
            250       260       270       280       290        300 

         230       240            250       260       270       280
mKIAA1 NSTFYVDYRTEDGSAKAGS-----DYEYSEGTLVFKPGETQKDLRIGIIDDDIFEEDEHF
       :.   :  :::.:.:...:     ::    : . :  ::. :.  . : :::.::. : :
mKIAA1 NQYAIVLCRTEQGTASSSSHPGQQDYMEYAGQVQFDEGESTKSCTVIINDDDVFENIESF
             310       320       330       340       350       360 

              290       300       310        320       330         
mKIAA1 FVRLLNLRVGDAQGMFEPDGGGRPKGRLVAPLL-ATVTILDDDHAGIFSFQDRLLHVSEC
        :                 : . :   :.. .  : : : : .    . :. .  .:.: 
mKIAA1 TV-----------------GLSMPAYALLGEFTQAKVIINDTEDEPTLEFDKKTYRVNES
                              370       380       390       400    

     340       350       360       370       380                   
mKIAA1 MGTVDVRVVRSSGARGTVRLPYRTVDGTARGGGVHYEDACGELE-----------FGDDE
        : . . . :.. . .::     ::  .: :....  .. ....           ::   
mKIAA1 AGFLFAPIKRQGDSSSTVSAVCYTVPKSAMGSSLYALESGSDFKSRGRSAESRVIFGPGV
          410       420       430       440       450       460    

      390       400       410          420       430       440     
mKIAA1 TMKTLQVKIVDDEEYEKKDNFFIELGQPQ---WLKRGISALLLNQGNGDKKITAEQEEAQ
       :..: .: ..:: :::....: : :.. .    . :   : .: .: .: . ..  . : 
mKIAA1 TVSTCDVMVIDDSEYEEEEEFEIALADASNNARIGRQAVAKVLISGPNDASTVSLGNTAF
          470       480       490       500       510       520    

         450       460       470       480       490       500     
mKIAA1 RIAEMGKPVLGENNRLEVIIEESYDFKNTVDKLIKKTNLALVIGTHSWREQFIEAVTVSA
        :.:                                                        
mKIAA1 TISEDAGTVKIPVIRHGTDLSTFTSVWCATRPSDPASATPGVDYVPSSRKVEFGPGITEQ
          530       540       550       560       570       580    




723 residues in 1 query   sequences
1768294 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:35:46 2006 done: Mon Mar 27 10:35:47 2006
 Scan time:  0.820 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]