FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0933.ptfa, 1556 aa
 vs ./tmplib.26680 library

1767461 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.8775+/-0.00467; mu= 19.2248+/- 0.313
 mean_var=95.9498+/-21.846, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1309

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1117  ( 218 res)   mbg01403                   ( 218)  276   63 9.5e-11


>>mKIAA1117  ( 218 res)   mbg01403                        (218 aa)
 initn: 329 init1: 242 opt: 276  Z-score: 285.3  bits: 62.7 E(): 9.5e-11
Smith-Waterman score: 301;  34.637% identity (38.272% ungapped) in 179 aa overlap (1391-1552:35-213)

             1370      1380      1390      1400      1410      1420
mKIAA0 TFIQLEEDLKEEDESRNSHKSNRIKAPVADGNGSAGRVLSPSDLTMYLSACKFLDTALAF
                                     ::: .    :   :..::::::::: :::.
mKIAA1 SCEPKVLMTALSGYRTSGPSAAGLETTYTGGNGFSTSYNSQRWLNLYLSACKFLDLALAL
           10        20        30        40        50        60    

             1430      1440      1450      1460      1470      1480
mKIAA0 PPDKMPLFQIYRWAFVPEVDTEHPAFLSELEENHQECRPHTVRILELLRSRYGEIGSSDE
       : ...: ::.:::::.::.. .    . .   ...: .:..::. .:::.:  .    : 
mKIAA1 PSENLPQFQMYRWAFIPEASDDSGLEVRRQGIHQREFKPYVVRLAKLLRKRAKKNPEEDC
           70        80        90       100       110       120    

                 1490      1500      1510              1520        
mKIAA0 ITRKKEF-P---LLRQHSVSCIRQLIPFFTTLNCAFKTQ--------SQLPADVPGTAAP
         :   . :   ::   ..  ..::.:::..:. .:...        :  :.  :..   
mKIAA1 SGRTLGWEPGHLLLTLCTMRNMEQLLPFFNVLSQVFNSKVTSRCGGHSGSPVLYPNSFPN
          130       140       150       160       170       180    

     1530          1540       1550       
mKIAA0 ECPVTENPRVL----RQ-LEECVEQDFLEHPEC 
       .    :: ...    :: .:: .:.::::     
mKIAA1 KDMKLENHKAFSSKARQKIEEMIEKDFLEGVIKT
          190       200       210        




1556 residues in 1 query   sequences
1767461 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:32:15 2006 done: Mon Mar 27 10:32:16 2006
 Scan time:  1.290 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]