FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1742.ptfa, 968 aa
 vs ./tmplib.26680 library

1768049 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 6.0464+/-0.00507; mu= 11.2119+/- 0.338
 mean_var=125.7032+/-30.183, 0's: 0 Z-trim: 3  B-trim: 56 in 1/35
 Lambda= 0.1144

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1337  ( 1243 res)   mfj02187                  (1243)  233   51 1.6e-06


>>mKIAA1337  ( 1243 res)   mfj02187                       (1243 aa)
 initn: 219 init1: 105 opt: 233  Z-score: 209.4  bits: 50.5 E(): 1.6e-06
Smith-Waterman score: 233;  29.268% identity (30.769% ungapped) in 164 aa overlap (87-246:335-494)

         60        70        80        90       100       110      
mKIAA1 RLLKYYLAEDTMYPLIALVVIFFGMSLYLRSLFITFMSLLGVLGSLMVAYFLYHVAFRMA
                                     :.:..:... ..  : .:: :::::.: . 
mKIAA1 EVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIASIGLSCLVALFLYHVVFGIQ
          310       320       330       340       350       360    

        120       130       140        150       160       170     
mKIAA1 YFPFVNLAALLLLSGVCVNYTLIFLDMWRL-SRGQVPSGGMPHRVGRTMHHFGYLLLVSG
       :. ..: .: ... :. :. ...:.. .:  .. . :.  : :    :..  :   . ..
mKIAA1 YLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDPQLRMIH----TIQTAGKATFFTS
          370       380       390       400           410       420

         180       190       200       210       220          230  
mKIAA1 LTTSAAFYGSYLSRLPAVRCFALFMGTAVLVHMGLTLLWLPATVVLHERYLA---HGCVA
       :::.::. .. .:..:::. :.:::.  :      .:. .::.. :   :.:    .:  
mKIAA1 LTTAAAYAANVFSQIPAVHDFGLFMSLIVTCCWLAVLFTMPAALGLWSLYMAPLESSCQN
              430       440       450       460       470       480

            240       250       260       270       280       290  
mKIAA1 QAHGQRGGSDPLRLLLALHRRIRIFRKIISILSRLLFQRLLPCGVIKFRYIWICWFAALA
       . : . : .. :..                                              
mKIAA1 SCHQKCGRKSSLHFPGDLFTAPERAGGGPAQGPLPYLDDDIPLLNVEDEPASLELGDVSL
              490       500       510       520       530       540




968 residues in 1 query   sequences
1768049 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:52:10 2006 done: Mon Mar 27 10:52:11 2006
 Scan time:  1.070 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]