FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1255.ptfa, 176 aa vs ./tmplib.26680 library 1768841 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.9355+/-0.00418; mu= 14.5784+/- 0.281 mean_var=91.8308+/-21.170, 0's: 0 Z-trim: 15 B-trim: 0 in 0/36 Lambda= 0.1338 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1643 ( 950 res) mbh04344 ( 950) 231 55 1.2e-08 mKIAA0993 ( 646 res) mbg00079 ( 646) 223 53 2.8e-08 mKIAA4212 ( 600 res) mbg08227 ( 600) 209 50 1.8e-07 mKIAA1537 ( 628 res) mbg18407 ( 628) 209 50 1.8e-07 mKIAA0305 ( 1536 res) mbg08215 (1536) 202 49 7.4e-07 mKIAA0647 ( 1186 res) mbg01911 (1186) 194 48 1.9e-06 mFLJ00274 ( 1530 res) mpf00869 (1530) 195 48 1.9e-06 mKIAA0321 ( 2548 res) mef00119 (2548) 187 47 7.2e-06 mKIAA0981 ( 2117 res) mib04069 (2117) 186 47 7.5e-06 mKIAA1435 ( 411 res) mbp03169 ( 411) 179 44 8e-06 mKIAA1362 ( 1407 res) mia41047 (1407) 181 45 1.2e-05 mKIAA4239 ( 1059 res) mfj24184 (1059) 168 43 5.8e-05 mKIAA1589 ( 775 res) mbh04724 ( 775) 165 42 7.3e-05 mFLJ00238 ( 1452 res) mfj01101 (1452) 161 42 0.00017 >>mKIAA1643 ( 950 res) mbh04344 (950 aa) initn: 181 init1: 181 opt: 231 Z-score: 247.7 bits: 54.8 E(): 1.2e-08 Smith-Waterman score: 231; 38.750% identity (40.789% ungapped) in 80 aa overlap (92-167:857-936) 70 80 90 100 110 120 mKIAA1 GNANLCRAIVRSGVRLGVNNNQGVNIFNYQVATKQLLFRLLDMLSKEPP-WCDGSNCYEC :....: . : ..:: : : : mKIAA1 PETDDKEKLKKVTQTLRSAALEDCALCQETVSSSELAAKTRDGDFEDPPEWVPDEACGFC 830 840 850 860 870 880 130 140 150 160 170 mKIAA1 T---AKFGVTTRKHHCRHCGRLLCHKCSTKEIPIIKFDLNKPVRVCNICFDVLTLGGVS : : : : :::::: ::...: .::.. :. .. ::::::. :. mKIAA1 TSCKAPFTVIRRKHHCRSCGKIFCSRCSSHSAPLPRYGQVKPVRVCTHCYMFHVTPFYSD 890 900 910 920 930 940 mKIAA1 KTGM 950 >>mKIAA0993 ( 646 res) mbg00079 (646 aa) initn: 185 init1: 162 opt: 223 Z-score: 240.9 bits: 53.0 E(): 2.8e-08 Smith-Waterman score: 223; 32.653% identity (34.409% ungapped) in 98 aa overlap (70-167:538-630) 40 50 60 70 80 90 mKIAA1 PEYPLDKPDAEGNTVLLLAYMKGNANLCRAIVRSGVRLGVNNNQGVNIFNYQVATKQLLF . .. :. :....: .:...: . : mKIAA0 RQLVFRSKLTMHTAFDRKDNTHPAEVTALGVSKDHSRILVGDSRG-RVFSWSV-SDQPGR 510 520 530 540 550 560 100 110 120 130 140 150 mKIAA1 RLLDMLSKEPPWCDGSNCYECTAKFGVTTRKHHCRHCGRLLCHKCSTKEIPIIKFDLNKP : :. :..: :...:..: :.::::.::.:.:.::: . : .. ...: mKIAA0 SAADHWVKDE---GGDSCSGCSVRFSLTERRHHCRNCGQLFCQKCSRFQSEIKRLKISSP 570 580 590 600 610 620 160 170 mKIAA1 VRVCNICFDVLTLGGVS ::::. :. mKIAA0 VRVCQNCYYSLQHERGAEDGPRNC 630 640 >>mKIAA4212 ( 600 res) mbg08227 (600 aa) initn: 169 init1: 121 opt: 209 Z-score: 226.6 bits: 50.2 E(): 1.8e-07 Smith-Waterman score: 209; 39.655% identity (41.071% ungapped) in 58 aa overlap (113-170:536-591) 90 100 110 120 130 140 mKIAA1 QGVNIFNYQVATKQLLFRLLDMLSKEPPWCDGSNCYECTAKFGVTTRKHHCRHCGRLLCH ....: .: :... ::::::.::...:. mKIAA4 GLHLSQSKLKMEDIKEVNKALKGHTWLKDDEATHCKQCEKDFSISRRKHHCRNCGHIFCN 510 520 530 540 550 560 150 160 170 mKIAA1 KCSTKEIPIIKFDLNKPVRVCNICFDVLTLGGVS ::..:. . .. ::::::. : .: mKIAA4 TCSSNELALPSYP--KPVRVCDSCHTLLLQRCSSTAS 570 580 590 600 >>mKIAA1537 ( 628 res) mbg18407 (628 aa) initn: 175 init1: 128 opt: 209 Z-score: 226.4 bits: 50.2 E(): 1.8e-07 Smith-Waterman score: 209; 43.103% identity (44.643% ungapped) in 58 aa overlap (113-170:564-619) 90 100 110 120 130 140 mKIAA1 QGVNIFNYQVATKQLLFRLLDMLSKEPPWCDGSNCYECTAKFGVTTRKHHCRHCGRLLCH :...: : .:... ::::::.::...:. mKIAA1 GSKLCESKLKIDDIKEANKALQGLVWLKDKDATHCKLCEKEFSLSKRKHHCRNCGEIFCN 540 550 560 570 580 590 150 160 170 mKIAA1 KCSTKEIPIIKFDLNKPVRVCNICFDVLTLGGVS :: .:.:. . ::::::. : .: mKIAA1 ACSDNELPLPSSP--KPVRVCDSCHAMLIQRCSSNMP 600 610 620 >>mKIAA0305 ( 1536 res) mbg08215 (1536 aa) initn: 168 init1: 134 opt: 202 Z-score: 215.4 bits: 49.5 E(): 7.4e-07 Smith-Waterman score: 202; 38.806% identity (41.935% ungapped) in 67 aa overlap (107-170:736-800) 80 90 100 110 120 130 mKIAA1 LGVNNNQGVNIFNYQVATKQLLFRLLDMLSKEPPWCDGS---NCYECTAKFGVTTRKHHC :.: : : ::..: .:: : :.::: mKIAA0 SNFEDGSSFVTANKDSLPENKRKESLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHC 710 720 730 740 750 760 140 150 160 170 mKIAA1 RHCGRLLCHKCSTKEIPIIKFDLNKPVRVCNICFDVLTLGGVS : ::...: : ... . .. :.: .::: ::..... mKIAA0 RACGKVFCGVCCNRKCKL-QY-LEKEARVCVICYETINKAQAFERMMSPGGSCLKSNHSN 770 780 790 800 810 820 mKIAA0 ECATDQPLQETQTSSTPSPTTLPISALKQPNVEGPCSKEQKRVWFADGILPNGEVADTTK 830 840 850 860 870 880 >>mKIAA0647 ( 1186 res) mbg01911 (1186 aa) initn: 144 init1: 144 opt: 194 Z-score: 208.2 bits: 47.8 E(): 1.9e-06 Smith-Waterman score: 194; 40.741% identity (40.741% ungapped) in 54 aa overlap (115-168:1109-1162) 90 100 110 120 130 140 mKIAA1 VNIFNYQVATKQLLFRLLDMLSKEPPWCDGSNCYECTAKFGVTTRKHHCRHCGRLLCHKC :.:..: .: .. :.::::.:: ..: : mKIAA0 HSEDCLSEASWEPVDKKETEVTRWVPDHMASHCFNCDCEFWLAKRRHHCRNCGNVFCAGC 1080 1090 1100 1110 1120 1130 150 160 170 mKIAA1 STKEIPIIKFDLNKPVRVCNICFDVLTLGGVS ..:: .: :: ::: :.. mKIAA0 CHLKLPIPDQQLYDPVLVCNSCYEHIQVSRARELMSQHLKKPIATASS 1140 1150 1160 1170 1180 >>mFLJ00274 ( 1530 res) mpf00869 (1530 aa) initn: 163 init1: 100 opt: 195 Z-score: 208.2 bits: 48.1 E(): 1.9e-06 Smith-Waterman score: 195; 31.868% identity (32.584% ungapped) in 91 aa overlap (83-172:1280-1369) 60 70 80 90 100 110 mKIAA1 TVLLLAYMKGNANLCRAIVRSGVRLGVNNNQGVNIFNYQVATKQLL-FRLLDMLSKEPPW :.. :...: .. : . : . : : mFLJ00 SCLTLSASSCAERDEWHYCLSRALPEDYKTQALAAFHHSVEIRERLGISLGERLPTLVPV 1250 1260 1270 1280 1290 1300 120 130 140 150 160 170 mKIAA1 CDGSNCYECTAKFGVTTRKHHCRHCGRLLCHKCSTKEIPIIKFDLNKPVRVCNICFDVLT . :..: :..:.:.:::. ::...:..:: .. :. : :. ..::. :: : mFLJ00 THAMMCMNCGCDFSLTVRRHHCHACGKIVCRNCSRNKYPL-KCLKNRMAKVCDGCFRELK 1310 1320 1330 1340 1350 1360 mKIAA1 LGGVS : mFLJ00 LRNGPVPGSMRERPVSMSFPLSSSRFSSGSALSSVFQSISPSTFKKQKKVPSALSEVAAS 1370 1380 1390 1400 1410 1420 >>mKIAA0321 ( 2548 res) mef00119 (2548 aa) initn: 184 init1: 118 opt: 187 Z-score: 197.7 bits: 46.9 E(): 7.2e-06 Smith-Waterman score: 187; 47.917% identity (48.936% ungapped) in 48 aa overlap (120-167:1831-1877) 90 100 110 120 130 140 mKIAA1 YQVATKQLLFRLLDMLSKEPPWCDGSNCYECTAKFGVTTRKHHCRHCGRLLCHKCSTKEI : .: . .:.::::.::::.: .::::.. mKIAA0 QPPVEFVPPETPPARDQWVPDETESVCMVCCREHFTMFNRRHHCRRCGRLVCGSCSTKKM 1810 1820 1830 1840 1850 1860 150 160 170 mKIAA1 PIIKFDLNKPVRVCNICFDVLTLGGVS . : : :.:::. :.. mKIAA0 VVEGFREN-PTRVCDQCYSYYNKDTPEESPCQSEVPDSAKNESPPYSAVVRVPKATEVEW 1870 1880 1890 1900 1910 >>mKIAA0981 ( 2117 res) mib04069 (2117 aa) initn: 168 init1: 168 opt: 186 Z-score: 197.4 bits: 46.6 E(): 7.5e-06 Smith-Waterman score: 186; 36.842% identity (36.842% ungapped) in 57 aa overlap (110-166:177-233) 80 90 100 110 120 130 mKIAA1 NNNQGVNIFNYQVATKQLLFRLLDMLSKEPPWCDGSNCYECTAKFGVTTRKHHCRHCGRL : . ..::.:. :: . :.:::: ::.. mKIAA0 QLRSLSTVLKRLKEIMEGKSQDSDLKQYWMPDSQCKECYDCSEKFTTFRRRHHCRLCGQI 150 160 170 180 190 200 140 150 160 170 mKIAA1 LCHKCSTKEIPIIKFDLNKPVRVCNICFDVLTLGGVS .: .: ..::: . . .:.:. : mKIAA0 FCSRCCNQEIPGKFMGYTGDLRACTYCRKIALSYAHSTDSNSIGEDLNALSDSTCSVSIL 210 220 230 240 250 260 >>mKIAA1435 ( 411 res) mbp03169 (411 aa) initn: 142 init1: 142 opt: 179 Z-score: 196.9 bits: 44.1 E(): 8e-06 Smith-Waterman score: 196; 27.068% identity (34.615% ungapped) in 133 aa overlap (50-168:233-350) 20 30 40 50 60 70 mKIAA1 LGQYGKENAAAIFDLFLECMPEYPLDKPDAEGNTVLLLAYMKGNANLCR-AIVRSGVRLG .: :.:: .. .:: ..:. : . mKIAA1 IACLWWDPIQRLLFSGASDNSVIMWDIGGRKGRTLLLQGHHDRVQSLCYLQLTRQLVSCS 210 220 230 240 250 260 80 90 100 110 120 mKIAA1 VNNNQGVNIFNYQVATKQLLFRLLDMLSKEPPWCDGSNCYECTAKF-----------GVT ... :. ..:..:. .. : : ....: .: : . mKIAA1 ADG--GIAVWNMDVSREE-----------APQWLESDSCQKCEQPFFWNIKQMWDTKTLG 270 280 290 300 130 140 150 160 170 mKIAA1 TRKHHCRHCGRLLCHKCSTKE--IPIIKFDLNKPVRVCNICFDVLTLGGVS :.::::.::. .: :::.:. :.. :... ::::. :.: mKIAA1 LRQHHCRKCGQAVCGKCSSKRSSYPVMGFEFQ--VRVCDSCYDSIKDEDRTSLATFHEGK 310 320 330 340 350 360 mKIAA1 HNISHMSMDIARGLMVTCGTDRVVKIWDMTPVVGCSLATGFSPH 370 380 390 400 410 176 residues in 1 query sequences 1768841 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:39:28 2006 done: Mon Mar 27 10:39:28 2006 Scan time: 0.380 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]