FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0713.ptfa, 577 aa vs ./tmplib.26680 library 1768440 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.6294+/-0.00411; mu= 15.7871+/- 0.275 mean_var=83.5291+/-19.195, 0's: 0 Z-trim: 3 B-trim: 6 in 1/35 Lambda= 0.1403 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0254 ( 1031 res) mbg01566 (1031) 203 51 4.3e-07 mKIAA0975 ( 1480 res) mbg09869 (1480) 184 48 7.8e-06 >>mKIAA0254 ( 1031 res) mbg01566 (1031 aa) initn: 142 init1: 87 opt: 203 Z-score: 219.7 bits: 51.4 E(): 4.3e-07 Smith-Waterman score: 229; 23.644% identity (29.144% ungapped) in 461 aa overlap (159-539:549-1002) 130 140 150 160 170 180 mKIAA0 YVRMLAELDMLKDPSFRGSDDGDGESFNGSPTGSINLSLDDLSSVTSDDSVQLHAYISDT : .: ..:...::: . .: . :. : mKIAA0 PSCLDKDLASGVCSLEPAMPPVPLSSSPPGPLSSATFSFESLSSPDGPVVIQ-NLRITGT 520 530 540 550 560 570 190 200 210 220 230 mKIAA0 GVCNDHGKT----YALYAITVHRRNLNTEE-------MWKTY-RRYSDFHDFHMRITEQ- . .:. : :.::.. .. :: :. ..: ::: .: ... :. :. mKIAA0 ITAREHSGTGFHPYTLYTVK-YETVLNGENSSGLQQLAYHTVNRRYREFLNLQTRLEEKP 580 590 600 610 620 630 240 250 260 270 280 mKIAA0 -----FENLSSILKLPGKKTFNNMDRDFLEKRKKDLNAYL-QLLLTPEMMKASPALAHCV ..:... :: :.::: : .: ::. :...: :: ::. .. . . mKIAA0 DLRKFIKNVKGPKKLFPDLPFGNMDSDRVEARKSLLESFLKQLCAIPEIGNSEEVQEFLA 640 650 660 670 680 690 290 300 310 320 330 mKIAA0 YDFLENKAYSKGKGDFAR--KM--DTFVNPLRNSM---------RNVSNAV-KSLPDSL- . :. : .: :: ...:. :.... ...:.: .: :.. mKIAA0 LNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKTAFPRSEPQSPTEELSEAENESKPQTEG 700 710 720 730 740 750 340 350 360 mKIAA0 -----------------AEGVTKMSDNV-------GRMSERLGQDIKQSF-------FKV : .... .:.. . :: :... .:: ... mKIAA0 KKASKSRLRFSSSKIAPALSIAEAQDKILYCLQEGNSESEVLSMSGMESFIEKQTKLLRI 760 770 780 790 800 810 370 380 390 400 mKIAA0 PPLITKTDSDPEHCRV----SAQLDDNV-----DDNIPLRVMLLLMDEVFDL-----KER : :.::.. :. :: : . . : . : : .::: :. mKIAA0 QP-AEVPDKDPQQVPKEYVDSGLLDKAVVAQELNKSGP-GTETELADTAFDLILLLLMEQ 820 830 840 850 860 870 410 420 430 440 450 460 mKIAA0 NQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRDAFWPNGILAE .:: . .:.... .: ..: . .: .: :.. :. .. .:...::.:.: . mKIAA0 WKWL---CTESMQKFLHIIFGTLVQRWLEVQVANLTCPQRWAQYLHLLRESIWPGGVLPK 880 890 900 910 920 930 470 480 490 500 510 520 mKIAA0 -TVPCRDKAIRMRTRIAGKTKLFAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMV : : .: . :. . .:. ..:: : .:.:.. : . :.: ::. .::... mKIAA0 FPRPGRTQAQKAATEKQALQSLMDLLPDFLVEILGVNKCRLSWSLVLESFQQPLINRHLI 940 950 960 970 980 990 530 540 550 560 570 mKIAA0 YVFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQSTQAPSLQKR : . . .:: : mKIAA0 YCLGDIILELLDLSASVEECAPATSASDSPGSLKKMAVST 1000 1010 1020 1030 >>mKIAA0975 ( 1480 res) mbg09869 (1480 aa) initn: 164 init1: 109 opt: 184 Z-score: 197.1 bits: 47.8 E(): 7.8e-06 Smith-Waterman score: 184; 38.298% identity (40.909% ungapped) in 94 aa overlap (197-290:76-163) 170 180 190 200 210 220 mKIAA0 LDDLSSVTSDDSVQLHAYISDTGVCNDHGKTYALYAITVHRRNLNTEEMWKTYRRYSDFH ::..:.: : : . : .:::::: mKIAA0 NMAAATLSFGPEREAEPAKEARVVGSELVDTYTVYVIQVTDGN----HEWTIKHRYSDFH 50 60 70 80 90 100 230 240 250 260 270 280 mKIAA0 DFHMRITEQFENLSSILKLPGKKTFNNMDRDFLEKRKKDLNAYLQLLLTPEMMKASPALA :.: ... . . .:.: : :: ... .:...:::..::..::: ::: : .:: mKIAA0 DLHEKLVAERKIDKSLL--PPKKIIGKNSRSLVEKRERDLEVYLQTLLTTFPDVAPRVLA 110 120 130 140 150 290 300 310 320 330 340 mKIAA0 HCVYDFLENKAYSKGKGDFARKMDTFVNPLRNSMRNVSNAVKSLPDSLAEGVTKMSDNVG : .. mKIAA0 HFLHFHLYEVNGVTAALAEELFEKGEQLLGAGEVFAIRPLQLYAITEQLQQGKPTCASGD 160 170 180 190 200 210 577 residues in 1 query sequences 1768440 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:26:58 2006 done: Mon Mar 27 10:26:59 2006 Scan time: 0.760 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]