FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1168.ptfa, 1259 aa vs ./tmplib.26680 library 1767758 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.5479+/-0.00411; mu= 18.9866+/- 0.275 mean_var=80.0040+/-18.367, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1434 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0068 ( 1279 res) mfj64209 (1279) 7469 1556 0 >>mKIAA0068 ( 1279 res) mfj64209 (1279 aa) initn: 7466 init1: 5148 opt: 7469 Z-score: 8342.8 bits: 1555.9 E(): 0 Smith-Waterman score: 7469; 86.894% identity (86.963% ungapped) in 1259 aa overlap (1-1258:21-1279) 10 20 30 40 mKIAA1 KTGAAAMTTHVTLEDALSNVDLLEELPLPDQQPCIEPPPS :.. . :...:::::::::::::::::::::::::::::: mKIAA0 RPAQVTHWGRKAPGARPGQPKAAQTRMAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPS 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA1 SIMYQANFDTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGHDYAVMLYTWRSCSRAIP :..:: ::.:::::::::::::::::::::::::::::::::..:::::::::::::::: mKIAA0 SLLYQPNFNTNFEDRNAFVTGIARYIEQATVHSSMNEMLEEGQEYAVMLYTWRSCSRAIP 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA1 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMKFMYFQRKAIERFCSEVKRLCHAERRKDFVS :::::::::::::::::::::::::::::.::::::.::::::.::.::::::::::::: mKIAA0 QVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEVRRLCHAERRKDFVS 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA1 EAYLLTLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL ::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::: mKIAA0 EAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNLSMFL 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA1 ANHNRITQCLHQQLEVIPGYEELLADIVNICVDYYENKMYLTPSEKHMLLKVMGFGLYLM ::::.::: :.:::::: :::::::::::.:::::::.:::::::::::::::::::::: mKIAA0 ANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLM 250 260 270 280 290 300 290 300 310 320 330 340 mKIAA1 DGNVSNIYKLDAKKRINLSKIDKFFKQLQVVPLFGDMQIELARYIETSAHYEENKSKWTC ::.::::::::::::::::::::.:::::::::::::::::::::.::::::::::.::: mKIAA0 DGSVSNIYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTC 310 320 330 340 350 360 350 360 370 380 390 mKIAA1 TQSSISPQYNICEQMVQIRDDHIRFISELARYSNSEVVTGSG-LDSQKSDEEYRELFDLA ..:: ::::::::::.:::.::.::::::::::::::::::: ..::.: :::.::::: mKIAA0 ASSSSSPQYNICEQMIQIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLA 370 380 390 400 410 420 400 410 420 430 440 450 mKIAA1 LRGLQLLSKWSAHVMEVYSWKLVHPTDKFCNKDCPGTAEEYERATRYNYTSEEKFAFVEV :.::::::.:::::::::::::::::::. ::::: .:::::::::::::.:::::.::: mKIAA0 LQGLQLLSQWSAHVMEVYSWKLVHPTDKYSNKDCPDNAEEYERATRYNYTTEEKFALVEV 430 440 450 460 470 480 460 470 480 490 500 510 mKIAA1 IAMIKGLQVLMGRMESVFNQAIRNTIYAALQDFAQVTLREPLRQAVRKKKNVLISVLQAI :::::::::::::::::::.:::.:.:::::::.:::::::::::..:::::. :::::: mKIAA0 IAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQVTLREPLRQAIKKKKNVIQSVLQAI 490 500 510 520 530 540 520 530 540 550 560 570 mKIAA1 RKTICDWEGGREPPNDPCLRGEKDPKGGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS :::.:::: :.:: ::: ::::::::.::::::::::::::::::::::::::::::::: mKIAA0 RKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLYMVRTMLESLIADKS 550 560 570 580 590 600 580 590 600 610 620 630 mKIAA1 GSKKTLRSSLDGPIVLAIEDFHKQSFFFTHLLNISEALQQCCDLSQLWFREFFLELTMGR ::::::::::.:: .: :: ::..:::.:::.:.::.::::::::::::::::::::::: mKIAA0 GSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLELTMGR 610 620 630 640 650 660 640 650 660 670 680 690 mKIAA1 RIQFPIEMSMPWILTDHILETKEPSMMEYVLYPLDLYNDSAYYALTKFKKQFLYDEIEAE ::::::::::::::::::::::: :::::::: ::::::::.::::::.::::::::::: mKIAA0 RIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTKFNKQFLYDEIEAE 670 680 690 700 710 720 700 710 720 730 740 750 mKIAA1 VNLCFDQFVYKLADQIFAYYKAMAGSVLLDKRFRAECKNYGVIIPYPPSNRYETLLKQRH :::::::::::::::::::::.::::.:::::.:.:::: :. : :::::::::::::: mKIAA0 VNLCFDQFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETLLKQRH 730 740 750 760 770 780 760 770 780 790 800 810 mKIAA1 VQLLGRSIDLNRLITQRISAAMYKSLDQAISRFESEDLTSIVELEWLLEINRLTHRLLCK :::::::::::::::::.::::::::. ::.:::::::::.:::. ::::::.::.:: . mKIAA0 VQLLGRSIDLNRLITQRVSAAMYKSLELAIGRFESEDLTSVVELDGLLEINRMTHKLLSR 790 800 810 820 830 840 820 830 840 850 860 870 mKIAA1 HMTLDSFDAMFREANHNVSAPYGRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQE ..::::::::::::::::::::::::::::::::.::::::::::::::::::..::.:: mKIAA0 YLTLDSFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQE 850 860 870 880 890 900 880 890 900 910 920 930 mKIAA1 PQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELL :::: :.:: ::.::: ::.::: ::.:::::::::::..:::::::::::::::::: mKIAA0 FQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELL 910 920 930 940 950 960 940 950 960 970 980 990 mKIAA1 KIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQLKDIIEYAELKTDVF :.::::::::::::::::.::::::::::::::::::::::::::::::.::::::: : mKIAA0 KVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQLKDIVEYAELKTVCF 970 980 990 1000 1010 1020 1000 1010 1020 1030 1040 1050 mKIAA1 QSLREVGNAILFCLLIEQALSQEEVCDLLHAAPFQNILPRVYIKEGERLEVRMKRLEAKY :.:::::::.::::::::.:: ::::::::::::::::::...:::::....:::::.:: mKIAA0 QNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRIHVKEGERVDAKMKRLESKY 1030 1040 1050 1060 1070 1080 1060 1070 1080 1090 1100 1110 mKIAA1 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRSYLQDPIWRGPPP :::::::::::::::::::::::::::::::::::::::::::::::..:.::::::: : mKIAA0 APLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLP 1090 1100 1110 1120 1130 1140 1120 1130 1140 1150 1160 1170 mKIAA1 TNGVMHVDECVEFHRLWSAMQFVYCIPVGTNEFTAEQCFGDGLNWAGCSIIVLLGQQRRF .:::::::::::::::::::::::::::::.:::.::::::::.:::: ::::::::::: mKIAA0 SNGVMHVDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRF 1150 1160 1170 1180 1190 1200 1180 1190 1200 1210 1220 1230 mKIAA1 DLFDFCYHLLKVQRQDGKDEIIKNVPLKKMADRIRKYQILNNEVFAILNKYMKSVETDSS ..::::::::::..:::::::::::::::..::::.::::.:...::.::.:: . .:. mKIAA0 AVLDFCYHLLKVQKHDGKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGEST 1210 1220 1230 1240 1250 1260 1240 1250 mKIAA1 TVEHVRCFQPPIHQSLATTC ::::::::::::::::.. mKIAA0 PVEHVRCFQPPIHQSLASS 1270 1259 residues in 1 query sequences 1767758 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:37:37 2006 done: Mon Mar 27 10:37:39 2006 Scan time: 1.110 Display time: 0.160 Function used was FASTA [version 3.4t11 Apr 17, 2002]