FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0975.ptfa, 1480 aa vs ./tmplib.26680 library 1767537 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.1303+/-0.00925; mu= -10.9528+/- 0.612 mean_var=502.6213+/-119.133, 0's: 0 Z-trim: 10 B-trim: 0 in 0/36 Lambda= 0.0572 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0845 ( 1046 res) mbh00862 (1046) 410 50 3.5e-06 mKIAA1071 ( 539 res) mpm04376 ( 539) 297 40 0.0015 mKIAA0613 ( 730 res) mfj11041 ( 730) 269 38 0.009 >>mKIAA0845 ( 1046 res) mbh00862 (1046 aa) initn: 557 init1: 329 opt: 410 Z-score: 203.2 bits: 49.8 E(): 3.5e-06 Smith-Waterman score: 422; 35.751% identity (36.508% ungapped) in 193 aa overlap (907-1098:543-732) 880 890 900 910 920 930 mKIAA0 IFVLPHEKFHFLRVYNQLRASLQDLKTVVISKNPSAKPRNQPAKSRASAEQRLQ-ETPAD .:.:. ::: . :.. . ..::. mKIAA0 AEEAASPEKETKSRVKEEAKSPGEAKSPGEAKSPGEAKSPAEAKSPGEAKSPGEAKSPAE 520 530 540 550 560 570 940 950 960 970 980 990 mKIAA0 APAPAAVPPTASAPAPAEALAPDLAPVQAPGEDRGLTSAEAPAAAEAPAAAEAPAAAEAP .:: : : .:::: .: : :..::: .. . :..:: :..:: :..:: :..: mKIAA0 PKSPAEPKSPAEAKSPAEAKSP--ATVKSPGEAKSPSEAKSPAEAKSPAEAKSPAEAKSP 580 590 600 610 620 630 1000 1010 1020 1030 1040 1050 mKIAA0 AAAEAPAAAEAPAAAEAPAPAEAPAAAEAPAAAEAPAAAEAPASAEAPAPNQAPAPARGP : ...:. :..:: ..:: :..:: ...:: :..:: ...:. :..:: ..:: :..: mKIAA0 AEVKSPGEAKSPAEPKSPAEAKSPAEVKSPAEAKSPAEVKSPGEAKSPAAVKSPAEAKSP 640 650 660 670 680 690 1060 1070 1080 1090 1100 1110 mKIAA0 APARGPAPAGGPAPAEALAQAEVPAQYPSERLIQSTSEENQIPSHLPVCPSLQHIARLRG : ...:. : .:. :.. :.:. ::. : ..: :. . : mKIAA0 AAVKSPGEAKSPGEAKSPAEAKSPAEAKSPIEVKSP-EKAKTPVKEGAKSPAEAKSPEKA 700 710 720 730 740 1120 1130 1140 1150 1160 1170 mKIAA0 RAIIDLFHNSIAEVENEELRHLLWSSVVFYQTPGLEVTACVLLSSKAVYFILHDGLRRYF mKIAA0 KSPVKEDIKPPAEAKSPEKAKSPVKEGAKPPEKAKPLDVKSPEAQTPVQEEAKHPTDIRP 750 760 770 780 790 800 >>mKIAA1071 ( 539 res) mpm04376 (539 aa) initn: 349 init1: 193 opt: 297 Z-score: 156.1 bits: 40.1 E(): 0.0015 Smith-Waterman score: 306; 35.537% identity (39.091% ungapped) in 242 aa overlap (905-1128:281-518) 880 890 900 910 920 930 mKIAA0 TAIFVLPHEKFHFLRVYNQLRASLQDLKTVVISKNPSAKPRNQPAKSRASAEQRLQETPA : . :.: : . :.: : mKIAA1 SRDCSTQTERGPESTKTAAVTPISAPMAGPVAAAAPAAAINATAATNTATAATNTTIMVA 260 270 280 290 300 310 940 950 960 970 980 mKIAA0 DAP---APAAVPPTASA---PAPAEALAPDLAPVQAPGEDRGLTSAE--APAAAEAPAAA :: : .:.: .:.: :: : ::: ::. . . ....:. .::: ::::. mKIAA1 AAPVAVAAVAAPAAAAATPSPANAAALAAAAAPATSVSAATSVSAANSISPAAPVAPAAV 320 330 340 350 360 370 990 1000 1010 1020 1030 mKIAA0 EAPAAAEAPAAA-EAPAAAE------APAAAEAPAPAEA--PAAAEAPAAAEAPAAAEAP ::: .:::: . :::: .:.:: : : . : :: : ::: . : :: mKIAA1 VPPAAPVSPAAAVQIPAAASLTPATVSPTAATATAAVAAATTAAITAAAAAATTAIQVAP 380 390 400 410 420 430 1040 1050 1060 1070 1080 1090 mKIAA0 A-SAEAPAPNQAPAPARGPAPARGPAPAGGPAPAEALAQAEVPAQYPSERLIQSTSEENQ : :: .:.: . :::: . : : :. :. :::.: . ::. :. :.:. . : mKIAA1 ATSAPVPSPASIPAPATAQASAPTPTQASTPAPTEP--PSPVPT--PTPALVQTEGPANP 440 450 460 470 480 1100 1110 1120 1130 1140 1150 mKIAA0 IPSHLPVCPSLQHIARLRGRAIIDLFHNSIAEVENEELRHLLWSSVVFYQTPGLEVTACV : : : .. . ::.: : mKIAA1 GASSGPRRLSTPNLMCNPDKPDAPAFHSSTLERKTPIQILGQEPDAEMVEYLI 490 500 510 520 530 1160 1170 1180 1190 1200 1210 mKIAA0 LLSSKAVYFILHDGLRRYFSEPLQDFWHQKNTDYNNSPFHVSQCFVLKLSDLQSVNVGLF >>mKIAA0613 ( 730 res) mfj11041 (730 aa) initn: 493 init1: 200 opt: 269 Z-score: 142.1 bits: 37.9 E(): 0.009 Smith-Waterman score: 269; 30.769% identity (34.409% ungapped) in 208 aa overlap (888-1084:279-475) 860 870 880 890 900 910 mKIAA0 AFADGHVLELLVGYRFVTAIFVLPHEKFHFLRVYNQLRAS--LQDLKTVVISKNPSAKPR .:. :. .. .:: .. . :. : mKIAA0 VYQAVIKTQSKPEDEADEWARRSSNLQSRSFRILAQMTGTEYMQDPDEEALRR--SSTPI 250 260 270 280 290 300 920 930 940 950 960 970 mKIAA0 NQPAKSRASAEQRLQETPADAPAPAAVPPTASAPAPAEALAPDLAPVQAPGEDRGLTSAE .. ..: . : ::.: .:::. : :..:. : : : : ..: : : mKIAA0 EHAPVCTSQATSPL--LPASAQSPAAASPIAASPTLATAAATHAAAASAAGP------AA 310 320 330 340 350 980 990 1000 1010 1020 1030 mKIAA0 APAAAEAP-AAAEAPAAAEAPAAAEAPAAAEAPAAAEAPAPAEAPAAAEAPAAAE-APAA .:. : :.: .:::: .:: . . .:.::: :: : . .:. :.. . .::. mKIAA0 SPVENPRPQASAYSPAAAASPAPSAHTSYSEGPAAP-APKPRVVTTASIRPSVYQPVPAS 360 370 380 390 400 410 1040 1050 1060 1070 1080 mKIAA0 AEAPASAE--APAP-NQAPAPARGPAPAR----GPAPAGGPAPAEALAQAEVPAQYPSER . .:. . .:.: . .:::: :.:: .:::. .:.:: : . . .: :. mKIAA0 SYSPSPGANYSPTPYTPSPAPAYTPSPAPTYTPSPAPTYSPSPAPAYTPSPAPNYTPTPS 420 430 440 450 460 470 1090 1100 1110 1120 1130 1140 mKIAA0 LIQSTSEENQIPSHLPVCPSLQHIARLRGRAIIDLFHNSIAEVENEELRHLLWSSVVFYQ mKIAA0 AAYSGGPSESASRPPWVTDDSFSQKFAPGKSTTTVSKQTLPWGAPAYNPTGPQVTPLARG 480 490 500 510 520 530 1480 residues in 1 query sequences 1767537 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:33:04 2006 done: Mon Mar 27 10:33:05 2006 Scan time: 1.290 Display time: 0.120 Function used was FASTA [version 3.4t11 Apr 17, 2002]