FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0902.ptfa, 1058 aa
 vs ./tmplib.26680 library

1767959 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 8.5318+/-0.00678; mu= 1.7481+/- 0.453
 mean_var=227.2035+/-55.230, 0's: 0 Z-trim: 6  B-trim: 88 in 1/35
 Lambda= 0.0851

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0403  ( 423 res)   mbp11090                   ( 423)  596   86 1.1e-17
mKIAA1686  ( 1205 res)   mbg21605                  (1205)  265   46 3.9e-05


>>mKIAA0403  ( 423 res)   mbp11090                        (423 aa)
 initn: 902 init1: 505 opt: 596  Z-score: 410.0  bits: 86.2 E(): 1.1e-17
Smith-Waterman score: 925;  36.052% identity (42.211% ungapped) in 466 aa overlap (585-1046:15-416)

          560       570       580       590       600       610    
mKIAA0 VPETTLYHTFQQSSLQHKSKKKNKGAISGKSKRRISCKDLGRGDCEGWLWKKKDAKSYFS
                                     :.:::::::::..::.:::.:::.  ...:
mKIAA0                 HSPVHATLAGFFNMSRRRISCKDLGHADCQGWLYKKKEKGTFLS
                               10        20        30        40    

          620       630       640       650       660       670    
mKIAA0 QKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRASECRKKYAFKACHPKIKSFY
       .::::.: ::: .::::: :.  :::.::..: .: ..:::::.:: :::  ::.::.::
mKIAA0 NKWKKFWVVLKGSSLYWYSNQMAEKADGFVNLSDFTVERASECKKKNAFKINHPQIKAFY
           50        60        70        80        90       100    

          680       690         700       710       720       730  
mKIAA0 FAAEHLDDMNRWLNRINMLTAGYA--ERERIKQEQDYWSESDKEEADTPSTPKQDSPPPP
       ::::.:..:: :::..     :.:  ..: : .... .:::..:. ..      ..::::
mKIAA0 FAAENLQEMNVWLNKL-----GFAVTHQESITKDEECYSESEQEDPEVAV----EAPPPP
          110       120            130       140           150     

            740       750       760       770       780       790  
mKIAA0 YDTYPRPPSMSCASPYVEAKHSRLSSTETSQSQSSHEEFRQEVTGSSAVSPIRKTASQ-R
       : .       . .:: :..  .. .:. . . . .   : .  .  .: : . ...:. :
mKIAA0 YAS-------TTSSPVVRVDAAQWASSSSPKRRETSCSFSSLENTVKAPSQFSSSGSKER
                160       170       180       190       200        

             800        810       820       830       840       850
mKIAA0 RSWQDLIET-PLTSSGLHYLQTLPLEDSVFSDSAAISPEHRRQSTLPTQKCHLQDHYGPY
       .::...... : : ..      :::  .    . :.:     :.  : ..: . .. :  
mKIAA0 QSWHNIVNSSPATEDA-----GLPLTFAEQVHTLAFSEASNCQA--PENNC-ITSEGGLL
      210       220            230       240         250        260

              860       870       880       890       900       910
mKIAA0 PLAESERMQVLNGNGGKPRSFTLPRDSGFNHCCLNTPVSACDPQDDIQPPEVEEEEEEEE
        :  :.  . ::.:                             .: .  :.         
mKIAA0 NLLSSDDTSSLNNN-----------------------------KDHLTVPD---------
              270                                    280           

              920       930       940       950       960       970
mKIAA0 EEAAGENVGEKNENREEKLGDSLQDLYRALEEASLSPLGEHRISTKMEYKLSFIKRCNDP
        .:::  .....: .  .  : .. ::..::.:::::::..: ::: : . ::.:::..:
mKIAA0 -RAAGSRMADREEIKSSE-DDEMEKLYKSLEQASLSPLGDRRPSTKKELRKSFVKRCKNP
             290        300       310       320       330       340

              980       990      1000      1010      1020      1030
mKIAA0 VMNEKLHRLRILKSTLKAREGEVAIIDKVLDNPDLTSKEFQQWKQMYLDLFLDICQSTTS
        .:::::..: :.:::: .: ..:.:...::.: ::......:: :   :. :: :. . 
mKIAA0 SINEKLHKIRTLNSTLKCKEHDLAMINQLLDDPKLTARKYREWKVMNTLLIQDIYQQQAP
              350       360       370       380       390       400

             1040      1050        
mKIAA0 NDPLSISSEVDVLTSSLTHTHSYIETHV
       .::    .::   :::            
mKIAA0 QDPEVTPQEVMNPTSSDCVENSL     
              410       420        

>>mKIAA1686  ( 1205 res)   mbg21605                       (1205 aa)
 initn: 236 init1: 126 opt: 265  Z-score: 184.5  bits: 46.0 E(): 3.9e-05
Smith-Waterman score: 265;  33.918% identity (37.179% ungapped) in 171 aa overlap (573-739:86-245)

            550       560       570        580       590       600 
mKIAA0 MDALRQDIMGTPVPETTLYHTFQQSSLQHKSKK-KNKGAISGKSKRRISCKDLGRGDCEG
                                     ::: .: :  :.. ::  .   . ::    
mKIAA1 ISMINEASNYNMASDYAVHPMSPVGRTSRASKKVHNFGKRSNSIKRNPNAPVVRRG----
          60        70        80        90       100       110     

             610       620       630       640       650           
mKIAA0 WLWKKKDAKSYFSQKWKKYWFVLKDASLYWYINEEDEKAEGFISLPEFKIDRAS---ECR
       ::.:. :. ..  . ::: ::::.:  :..: .:..:   : : :: :.:   .   .  
mKIAA1 WLYKQ-DSTGM--KLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIAMLTAEDHIN
              120         130       140       150       160        

      660       670       680       690       700       710        
mKIAA0 KKYAFKACHPKIKSFYFAAEHLDDMNRWLNRINMLTAGYAERERIKQEQDYWSESDKEEA
       .:::::: ::.....:: ..   .:. :..   :: :. .. : .:.   .  . ::  .
mKIAA1 RKYAFKAAHPNMRTYYFCTDTGKEMELWMK--AMLDAALVQTEPVKR-ITFNFRVDKITT
      170       180       190         200       210        220     

      720       730       740       750       760       770        
mKIAA0 DTPSTPKQDSPPPPYDTYPRPPSMSCASPYVEAKHSRLSSTETSQSQSSHEEFRQEVTGS
       :. :: :. .  : . .  ::                                       
mKIAA1 DSAST-KETNNIPNHRVLIRPEVQNHQKNKEISKIEEKRALEAERYGFQKDGQDRPLTKI
         230        240       250       260       270       280    




1058 residues in 1 query   sequences
1767959 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:31:34 2006 done: Mon Mar 27 10:31:35 2006
 Scan time:  1.060 Display time:  0.070

Function used was FASTA [version 3.4t11 Apr 17, 2002]