FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0549.ptfa, 524 aa vs ./tmplib.26680 library 1768493 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.0355+/-0.00652; mu= 1.7146+/- 0.435 mean_var=205.9448+/-48.657, 0's: 0 Z-trim: 1 B-trim: 2 in 1/35 Lambda= 0.0894 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1042 ( 1016 res) mbg06245 (1016) 502 77 6.7e-15 >>mKIAA1042 ( 1016 res) mbg06245 (1016 aa) initn: 1151 init1: 291 opt: 502 Z-score: 359.8 bits: 77.2 E(): 6.7e-15 Smith-Waterman score: 1165; 44.346% identity (50.605% ungapped) in 566 aa overlap (1-521:464-1004) 10 20 mKIAA0 EESVSKQKAQQKRVFDTVKVANDT-RGRSV :: : . ..:::::.::. .:.. . ::. mKIAA1 TSRRYHSLGLFPMDSLAAEIEGTMRKELQLEELESPDITHQKRVFETVRNVNQVVKQRSL 440 450 460 470 480 490 30 40 50 60 70 mKIAA0 TFPVLLPIPGSNRSSVIMT------AKP----FESGVQPA--EDKT--LLSPGGSTEVPG : : . :::::.::.. . . : . : :. . ..:: .: .... . mKIAA1 T-PSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDVSNVVLDNKTNSILLETEAADLGN 500 510 520 530 540 550 80 90 100 110 120 130 mKIAA0 NSRPTNP--PGSPEDSDLATALHRLSLRRQNYLSEKQFFAEEWERKIQILAEQEEEVSSC ... .: ::.: . :: :::.::::::.:::::..:: :: :::.. :::. : :. mKIAA1 EDHNKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLRELAEKGELHSGS 560 570 580 590 600 610 140 150 160 170 180 190 mKIAA0 DAPTENLASVCTDQ--SETTDL-GSAGCLRGFMPEKLQIVKPLEGSQTLHHWQQLAQPNL .:::.. :. : . :: : . : . :...::::::::::::: :::::::::::.: mKIAA1 LTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGSATLHHWQQLAQPHL 620 630 640 650 660 670 200 210 220 230 240 mKIAA0 GTILDPRPGVITKGFT--QVPKDVVYHISDLEEDEEEGITFQVQQPLQLEQKPALPTPVT : ::::::::.:::: .: : :: ..:.:::. . . ..: : ::. mKIAA1 GGILDPRPGVVTKGFRTLDVDLDEVYCLNDFEEDD-------TGDHISLAGL-ATSTPIQ 680 690 700 710 720 250 260 270 280 290 300 mKIAA0 GIFLPPMTSAGGPGTVATSNPGKCLSFTNSTFTFTTCRILHPSD-ITQVTPSSGFPSLAC : ::: .::::.: ::::::::::::::::: .:.::: .. :. :: mKIAA1 H----PETSA--------HHPGKCMSQTNSTFTFTTCRILHPSDELTRVTPLNSAPAPAC 730 740 750 760 770 310 320 330 340 350 360 mKIAA0 GSSASSSSNTAVNSPAASYRLSIGESITNRRDSTITFSSTRSLAKLLQERGISAKVYHSP ::.: ..: : .: . :::..::.:: :.:: :.:.. .:. ::.:::::: :: mKIAA1 -SSTSHLKSTPVATPCTPRRLSLAESFTNVRESTTTMSTSLGLVWLLKERGISAAVYDPQ 780 790 800 810 820 830 370 380 390 400 410 420 mKIAA0 ----ASENPLLQP-CPKALATPSTPPNSPAQSPCSSPLPFEPRVHVS--ENFLASRPAET :... ::. :. . :::::::: :.: .:: :: . .:::::.:: . mKIAA1 SWDRAGRGSLLHSYTPRMAVIPSTPPNSPMQTPSASPPSFEFKCTSPPYNNFLASKPASS 840 850 860 870 880 890 430 440 450 460 470 mKIAA0 FLQEMYGLRPSRAPP---DVGQLKMNLVDRLKRLGIARVVKTPDPQENGKSREAEMGLQK .:.:. :: :. ::. ..::::...:.:.::::.. . ..: : mKIAA1 ILREVREKRPVRSSESQTDVSVSNLNLVDKVRRFGVARVVNSGRARIPTLTEEQGPLLCG 900 910 920 930 940 950 480 490 500 510 520 mKIAA0 PD-PAVYLNSGG------SLLC--GLRRNQSLPVMMGS---FGAPVCTTSPKMGILKED : :: : :: : : :.:::.:.:.:.:: . ::: :: ::: mKIAA1 PTGPAQALVPGGLVPEGLPLGCPSGIRRNRSFPTMVGSSVQMRAPVILTS---GILMGAK 960 970 980 990 1000 mKIAA1 LPKQTSLR 1010 524 residues in 1 query sequences 1768493 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:22:55 2006 done: Mon Mar 27 10:22:56 2006 Scan time: 0.760 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]