FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0275.ptfa, 380 aa
 vs ./tmplib.26680 library

1768637 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.5679+/-0.00478; mu= 10.3700+/- 0.319
 mean_var=111.9463+/-25.911, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1212

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA4039  ( 488 res)   mid20034                   ( 488) 1351  247 2.1e-66


>>mKIAA4039  ( 488 res)   mid20034                        (488 aa)
 initn: 1082 init1: 363 opt: 1351  Z-score: 1284.5  bits: 246.8 E(): 2.1e-66
Smith-Waterman score: 1355;  47.044% identity (48.413% ungapped) in 389 aa overlap (1-379:96-483)

                                             10        20        30
mKIAA0                               WLSSISQYSGKIKHWNRFRDEVEDDYIKSW
                                     ::..::::. .. .::.:::::::::...:
mKIAA4 AWCSQTLAAAAAVAVAGGRSDGGNFLDEKQWLTTISQYDKEVGQWNKFRDEVEDDYFRTW
          70        80        90       100       110       120     

               40        50        60        70        80          
mKIAA0 EDNQQGDEALDTTKDPCQKVKCSRHKVCVAQGYQRAMCISRKKLEHRIKQ---PSLKLHG
       . ..  :.::: .:::: :.::::::::..:  : :.:::...: : .:.      . .:
mKIAA4 NPGKPFDQALDPAKDPCLKTKCSRHKVCITQDAQTALCISHRRLTHSMKEVGGSHKQWRG
         130       140       150       160       170       180     

        90       100       110       120       130       140       
mKIAA0 GKDSVCKPCHMAQLASVCGSDGHTYSSVCKLEQQACLSSKQLAVRCEGPCPCPTEQSTAS
         .:.:::: .:  . :::::::.::: :::: :::. .::....::: ::::...:   
mKIAA4 LPSSTCKPCPIAYASPVCGSDGHSYSSQCKLEYQACVLGKQISIKCEGRCPCPSDKSMNI
         190       200       210       220       230       240     

       150       160       170       180       190         200     
mKIAA0 TTDSKSETCTGQDLADLGDRLRDWFQLLRENSKQNGSANSATNP--AGLDKSLGASCKDS
         . : ..:.  .. ....::::::. :.:...:: ....   :  . .: :.   ::::
mKIAA4 GRNVK-RACSDLEFREVANRLRDWFKALHESGSQNKKTKALLRPERSRFDTSILPICKDS
         250        260       270       280       290       300    

         210       220       230       240       250       260     
mKIAA0 IGWMFSKLDTSGDLFLDQTELAAINLDKYEVCIRPFFNSCDTYKDGRVSTAEWCFCFWRE
       .::::..:::. ::.:::.::..: ::: : : . ::::::::::. .:. :::.:: :.
mKIAA4 LGWMFNRLDTNYDLLLDQSELGSIYLDKNEQCTKAFFNSCDTYKDSLISNNEWCYCFQRQ
          310       320       330       340       350       360    

          270       280       290       300       310       320    
mKIAA0 K-PPCLAELERTQIQEAAKKKPGVFIPSCDEDGYYRKMQCDQSRGDCWCVDQLGLELTGT
       . ::: .::   : ... ::  : .:: :::::::.  ::  : :.:::::. : :..:.
mKIAA4 QDPPCHTELSNIQKRQGIKKLLGQYIPLCDEDGYYKPTQCHGSVGQCWCVDRYGNEVVGS
          370       380       390       400       410       420    

          330       340         350         360       370       380
mKIAA0 RMHGTPDCDDIVGFSGDFGSG--VGWEDEEEKETE--EAGEEAEEEEGEAGEADDGGYIW
       :..:. ::     .::::.::    : :.: .: .  .  .. :... . :. :: : . 
mKIAA4 RINGVADCAIDFEISGDFASGDFREWTDDEGEEDDIMNDKDDIEDDDEDEGDDDDDGDVH
          430       440       450       460       470       480    

mKIAA4 DGYI
           




380 residues in 1 query   sequences
1768637 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:16:18 2006 done: Mon Mar 27 10:16:18 2006
 Scan time:  0.600 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]