FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4016.ptfa, 465 aa
 vs ./tmplib.26680 library

1768552 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.6771+/-0.00443; mu= 20.8497+/- 0.297
 mean_var=83.2855+/-19.087, 0's: 0 Z-trim: 2  B-trim: 56 in 1/35
 Lambda= 0.1405

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0123  ( 509 res)   mph00209                   ( 509)  408   93 7.2e-20


>>mKIAA0123  ( 509 res)   mph00209                        (509 aa)
 initn: 584 init1: 190 opt: 408  Z-score: 449.1  bits: 92.5 E(): 7.2e-20
Smith-Waterman score: 611;  29.712% identity (31.678% ungapped) in 451 aa overlap (32-460:50-494)

              10        20        30        40        50        60 
mKIAA4 LLRTRRSPALLRLPALRGTATFAQALQSVPETQVSILDNGLRVASEQSSHATCTVGVWID
                                     ::.:. :::::::::...    ::::. :.
mKIAA0 GATYPNIPLSSPLPGVPKPIFATVDGQEKFETKVTTLDNGLRVASQNKFGQFCTVGILIN
      20        30        40        50        60        70         

              70        80         90       100       110       120
mKIAA4 AGSRYETEKNNGAGYFLEHLAFKGT-KNRPGNALEKEVESIGAHLNAYSTREHTAYLIKA
       .:::::..  .: ..:::.:::..: .    . .   .:. :.  .  ..:. : : ..:
mKIAA0 SGSRYEAKYLSGIAHFLEKLAFSSTARFDSKDEILLTLEKHGGICDCQTSRDTTMYAVSA
      80        90       100       110       120       130         

              130       140       150       160         170        
mKIAA4 LSKDLPKVVELLADIVQNSSLEDSQIEKERDVILREMQEND--ASMQNVVFDYLHATAFQ
        :: :  ::.::::.: .  : : .::  : ..  :... .   . . .. ...: .::.
mKIAA0 DSKGLDTVVDLLADVVLHPRLTDEEIEMTRMAVQFELEDLNMRPDPEPLLTEMIHEAAFR
     140       150       160       170       180       190         

      180       190       200       210       220       230        
mKIAA4 GTPLAQAVEGPSENVRRLSRTDLTDYLNRHYKAPRMVLAAAGGVEHQQLLDLAQKHLSSV
        . ..     : ::. ...:  : .::. .:   :::::..: :::..:.. :.:.: ..
mKIAA0 ENTVGLHRFCPVENIAKIDREVLHSYLKNYYTPDRMVLAGVG-VEHEHLVECARKYLVGA
     200       210       220       230       240        250        

      240       250            260                 270       280   
mKIAA4 SRVYEEDAVPGLTPC-----RFTGSEIR-HRD--------DALP-LAHVAIAVEGPGWAN
         ..   ..:: .       ..::. :. .::          .: :.:. ...:. .. .
mKIAA0 EPAW---GAPGTVDVDRSVAQYTGGIIKVERDMSNVSLGPTPIPELTHIMVGLESCSFLE
      260          270       280       290       300       310     

           290       300          310       320       330       340
mKIAA4 PDNVTLQVANAIIGHYDCTYGGGV---HLSSPLASVAVANKLCQSFQTFNISYSDTGLLG
        : . . : : ..:      .::     .:    .:   ..   .  ... :: ::::: 
mKIAA0 DDFIPFAVLNMMMGGGGSFSAGGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLC
         320       330       340       350       360       370     

              350       360       370       380       390       400
mKIAA4 AHFVCDAMSIDDMVFFLQGQWMRLCTSATESEVTRGKNILRNALVSHLDGTTPVCEDIGR
        :   :  .. .:: ..  ... .  ..   :. :.:. : . :. .:..   . ::.::
mKIAA0 IHASADPRQVREMVEIITKEFILMGRTVDLVELERAKTQLMSMLMMNLESRPVIFEDVGR
         380       390       400       410       420       430     

               410       420       430       440       450         
mKIAA4 SLL-TYGRRIPLAEWESRIQEVDAQMLRDICSKYFYDQCPAVAGYGPIEQLPDYNRIRSG
       ..: :..:..:  :  . :..:  . .. . ::..  . ::::. : . .:: :..:...
mKIAA0 QVLATHSRKLP-HELCTLIRNVKPEDIKRVASKMLRGK-PAVAALGDLTDLPTYEHIQAA
         440        450       460       470        480       490   

     460               
mKIAA4 MFWLRF          
       .               
mKIAA0 LSSRNGHLPRSYRLFR
           500         




465 residues in 1 query   sequences
1768552 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:59:18 2006 done: Mon Mar 27 10:59:19 2006
 Scan time:  0.690 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]